BAC Information

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BAC

Clone NameMSMg01-367H15
Chromosome10 (Build37)
Map Location 62,361,663 - 62,497,697
singlet/doubletdoublet
Overlap geneSlc25a16, Dna2l, Rufy2, Hnrph3, 3110049J23Rik
Upstream geneCol13a1, EG436164, EG432466, 2010107G23Rik, Neurog3, Tspan15, Tacr2, Hk1, 2210417K05Rik, Hkdc1, Supv3l1, Vps26a, Srgn, 2510003E04Rik, Ddx21, Ddx50, Stox1, Ccar1, Cxxc6
Downstream genePbld, Atoh7, Mypn, 1700120B22Rik, Herc4, Sirt1, Dnajc12, LOC665182, EG631906, Ctnna3, Lrrtm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367H15.T7 (MSMg01no367_h15.b1)MSMg01-367H15.TJ (MSMg01no367_h15.g1)
ACCAG474935AG474936
length771750
length of high quality
(start - end)
142 (258 - 399)208 (204 - 411)
definitionCHROMAT_FILE: MSMg01no367_h15.b1 PHD_FILE: MSMg01no367_h15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:39 2005CHROMAT_FILE: MSMg01no367_h15.g1 PHD_FILE: MSMg01no367_h15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,497,556 - 62,497,697)(62,361,663 - 62,361,870)
sequence
NNCCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCAGATCATACTGTGGATCAGGTCCTGCTGAGGATGTTTTGCCA
GGCTTATAGCAAACCCTTTTCTTGCTATGTGCTCCCACACCCTGATGGGG
AGGGTTCTAGTGATTCGTTATCAGGGCACAAATTCCATCATAAGGATCCC
CCCCCCATCATGAATCCATCTAACATTACTATCATCCCCATAGCAGCATC
TACTAAATCCATCGCGCTCTGAGTGAAGCATCAGGACATTAACGTAGAGG
AGATTCTGCTGAATTCATGGCTCATCTCTTGCCAATGCCTGATTCTGAGA
CCTGTTTTAGACTTGTGACTTCGTGGTGAGATAGTAGGAAATGAAACTCA
TACCCAGGTTGGAGCAATCCTGGACTGTACCGTGAGCACCTCTCTTGTTA
ATAAGTTCCTCCCTACTCCAACCTACAACCCAGCTTACTTGCTGGATCAC
AAAATGTGCAGGATTTCCCTCCACCAATCAGCAAAAAGTCAGTCACTCCC
ACATTGTACACTGGGTAGATAGCCTCTATTTTAATCCCATAATGTCACAG
CCTAATTAACATCCTACATTATGAGAACCCTTTTTTCTCCCACCCAAAGT
TTATTTTTTTCAAATGCCCTAACAACCCCAGATTTCGGACCTCTTTTTCC
CCCCAGCCCCTTTCTTTGTGTTTAAAAAACTGTTTGGGACCTTTTTCGGA
ACCTCATTTTGTCTTTTTGTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCAGGACAGCCAGGGCTACAGAAAAACCCTATCTCACCAAAAAG
AAAAAAAAAGACCAAAAGAAAAGAACAAAGACCTTTCTAAGGGACATGGA
GAGGAGACTCAGCAGTCGAGAGCATCCGGTCTTCTTCAAGAGTACCGGGT
TCAAATCCCAGTGCCCACAGGGCAGGTCTTACCTGTCTAGAACTCCAGAC
CCAGGGCTTCTGGCACCTTTTTCAGAAACACAGACAGCCAAAGCAACAAT
GCGCAAAAGATAAAAATAAATTATATTTTGTTTTTCAAGACAGGGTTTCT
CTCTTCAGCCCTGGCGGACCTGGAACTCATTCTGTAGACCAGGATGGCCT
TGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGG
GTGCACCACTAGAGCCCGGTTTAAGAACATGAGAGCAACCCTATAGGTGG
AACAACAGTATGAACTAACCAATACGCCCCCAGAGCTCATGTTTCTAGCT
GCATATGTATCATAAGATGGTGTACTCGGCCATCATTGGAAAGAGAGGAC
CAATGTACGTGCAGACTTTATTTGCCTCAGTACCGGGATACGCCGAAGCC
AATAATTGGAAGTGGCTGGGAGTCGATATCTCCTTTCCCCCAAGGCTTGT
ACTTTGGATATACTCTTTTATAAATTTTCCTCGGCTTGCTTATTTCCTTT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_h15.b1 MSMg01no367_h15.b1 CHROMAT_FILE:
MSMg01no367_h15.b1 PHD_FILE: MSMg01no367_h15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:39 2005
         (142 letters)



>mm_chr10_62497356_62497897
          Length = 542

 Score =  244 bits (126), Expect = 2e-69
 Identities = 138/142 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccatcgcgctctgagtgaagcatcaggacattaacgtagaggagattctgctgaattca 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 342 tccatcgcgctctgagtgaagtatcaggacattaacgtagaggagattctgctgagttca 283

                                                                       
Query: 61  tggctcatctcttgccaatgcctgattctgagacctgttttagacttgtgacttcgtggt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 282 tggctcatctcttgccaatgcctgattctgagacctgttttagacttgtgactttgtgtt 223

                                 
Query: 121 gagatagtaggaaatgaaactc 142
           ||||||||||||||||||||||
Sbjct: 222 gagatagtaggaaatgaaactc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 142
Length of database: 542
Length adjustment: 8
Effective length of query: 134
Effective length of database: 534
Effective search space:    71556
Effective search space used:    71556
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no367_h15.g1 MSMg01no367_h15.g1 CHROMAT_FILE:
MSMg01no367_h15.g1 PHD_FILE: MSMg01no367_h15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:39 2005
         (208 letters)



>mm_chr10_62361463_62362070
          Length = 608

 Score =  364 bits (188), Expect = e-105
 Identities = 203/208 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatcccagtgcccacagggcaggtcttacctgtctagaactccagacccagggcttctgg 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| 
Sbjct: 201 aatcccagtgcccacagggcaggtcttacctgtctagaactccagatccagggcttctga 260

                                                                       
Query: 61  cacctttttcagaaacacagacagccaaagcaacaatgcgcaaaagataaaaataaatta 120
           ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 261 cacctttttcagaaacacagacagccaaagcaacaatgcgcaaaaaataagaataaatta 320

                                                                       
Query: 121 tattttgtttttcaagacagggtttctctcttcagccctggcggacctggaactcattct 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 tattttgtttttcaagacagggtttctctcttcagccctggcggtcctggaactcattct 380

                                       
Query: 181 gtagaccaggatggccttgaactcagaa 208
           ||||||||||||||||||||||||||||
Sbjct: 381 gtagaccaggatggccttgaactcagaa 408


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 208
Length of database: 608
Length adjustment: 9
Effective length of query: 199
Effective length of database: 599
Effective search space:   119201
Effective search space used:   119201
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)