BAC Information

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BAC

Clone NameMSMg01-367N09
Chromosome10 (Build37)
Map Location 69,867,295 - 70,063,784
singlet/doubletdoublet
Overlap gene1200015N20Rik, LOC665398, Phyhipl, EG665429
Upstream geneAnk3, LOC100039734, 5730416O20Rik, Ccdc6, 2310015B20Rik, Slc16a9, LOC632955
Downstream geneBicc1, LOC622551, C730027H18Rik, Tfam, Ube2d1, LOC665472, Zcd1, Ipmk, LOC100039860, LOC216081
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367N09.T7 (MSMg01no367_n09.b1)MSMg01-367N09.TJ (MSMg01no367_n09.g1)
ACCAG475210AG475211
length789753
length of high quality
(start - end)		516 (72 - 587)539 (57 - 595)
definitionCHROMAT_FILE: MSMg01no367_n09.b1 PHD_FILE: MSMg01no367_n09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:06 2005CHROMAT_FILE: MSMg01no367_n09.g1 PHD_FILE: MSMg01no367_n09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,063,269 - 70,063,784)(69,867,295 - 69,867,833)
sequence
NCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCTGATTTCCGAACACACTGAGCTTTGGCTGTCGATATCTAGTT
CTGCTGATCTAGGTTTTTGAACATAAGAAATTCACCATTTTTCTTGACAA
ACAGTAATTTACTCTCTCCTTAAGGTATCTCCTACCTTGATACTGGAATG
TTTTTCCCAGCTCAAAACAAAGGTCCATCTCATTAATCCCGAAGTTCATA
ACGAGGACATTTCACTTAATGATACCAAATTACCTTACACGGATTTTTAT
CAACCTTCAATTGTGCCAAATTTCTTCACGGGTTTATTTTATCTAAAGCG
GGGCCTTCCATTTTATGAGACATCAATTAATTAGATTTAGTTGTTTATGG
CTAAATGGATGTGACTAGAAAAGGCAGCATATAGCAATCTATATGTAAAT
TGTTTTTATTGGTGAATATCAATGTTTGAAATTGGAAAATGAGTAAACAT
GGAACATAAATTATTACCAATAACTATAAATAATACAAGGGGGAGAGGGG
CTTCTTTTGATCCCGTGATACCAAGAAAAACAAAATAACATTCCGAATCA
GTAAATGAGAACAGAGGCCAACAGGCTGTCATCTATATAAGGCTTTATTT
TAAAACCTTTGCACCATCCGAAGTGGACTGAAAAATCTTTATGTGCTCCT
GAAAAAAATGGGGCGGGGCAAATAGGTCCTTCACTGGAAGAAACACAGTG
TCCCCCCTTTTTTTTTCTTAGGGGAAAAAAAAAAAGAGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXAATGCTTCCTATGTTAAACAGCACTAGACACTGAGTGATGGAGA
CCCAACTTTAGGCACATAAATGGGAAGAAATGAATGAACTTGGCATGAAT
TCCTACGAGGAGGGTGGCACAGGTAAGCCTCAGAAACCATCAGAACCACA
GCTCTGCCTACCAGACTCTCCTGCTTTCTCCTGCCCAGTGCCTTTGCTAC
ACTTGCCCACTTAAGATTCTGTCATCTATATCATGTACCTACATCTAGTA
ACCCTCGAAATAGCATTATCAGCTTCCTGCCTCGTTACGTGTTAAATGTT
GAGTCCCCGGCTCAAATTCAAATACTGAACTCATAACCCCTGGTGTGTCT
GTATCTGCAGATGGGGGCTGTAAGGAAGGGGTGTGGGTTAAATAACGTCT
GACGGGATTAATATCTTCTTTCTAAGAAGATACTCCAGAGAGTTACTCAT
TCTCTGTCTGCAAGGAGCACACAGGATAGCCCTGTGGGGACATGATACTA
GCTAATGGATGCCTACAAGCTACAAAAAGAACCGTCCCAGGAAACAGAAT
GGGTACCCCTAACTTTGTCTCAATTCGGAAACTTCAGATGACTCTGCTTG
GCTCAGGGTGAGCTGTGGCCATACTTTTGAAAAAGAAAGAAGGGATTTGT
TATAAGGAGAGGGCACTAAAAACCGGGAGTTTTCTCAGGTGGCCGGGTAA
CAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_n09.b1 MSMg01no367_n09.b1 CHROMAT_FILE:
MSMg01no367_n09.b1 PHD_FILE: MSMg01no367_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:06 2005
         (516 letters)



>mm_chr10_70063069_70063984
          Length = 916

 Score =  951 bits (492), Expect = 0.0
 Identities = 510/516 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactgagctttggctgtcgatatctagttctgctgatctaggtttttgaacataagaaat 60
           ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 cactgtgctttggctgtcaatatctagttctgctgatctaggtttttgaacataagaaat 657

                                                                       
Query: 61  tcaccatttttcttgacaaacagtaatttactctctccttaaggtatctcctaccttgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 tcaccatttttcttgacaaacagtaatttactctctccttaaggtatctcctaccttgat 597

                                                                       
Query: 121 actggaatgtttttcccagctcaaaacaaaggtccatctcattaatcccgaagttcataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 actggaatgtttttcccagctcaaaacaaaggtccatctcattaatcccgaagttcataa 537

                                                                       
Query: 181 cgaggacatttcacttaatgataccaaattaccttacacggatttttatcaaccttcaat 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 536 cgaggacatttcacttaatgataccaaattaccttacacggatgtttatcaaccttcaat 477

                                                                       
Query: 241 tgtgccaaatttcttcacgggtttattttatctaaagcggggccttccattttatgagac 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tgtgccaaatttcctcacgggtttattttatctaaagcggggccttccattttatgagac 417

                                                                       
Query: 301 atcaattaattagatttagttgtttatggctaaatggatgtgactagaaaaggcagcata 360
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 atcaattaactagatttagttgtttatggctaaatggatgtgactagaaaaggcagcata 357

                                                                       
Query: 361 tagcaatctatatgtaaattgtttttattggtgaatatcaatgtttgaaattggaaaatg 420
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tagtaatctatatgtaaattgtttttattggtgaatatcaatgtttgaaattggaaaatg 297

                                                                       
Query: 421 agtaaacatggaacataaattattaccaataactataaataatacaagggggagaggggc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 agtaaacatggaacataaattattaccaataactataaataatacaagggggagaggggc 237

                                               
Query: 481 ttcttttgatcccgtgataccaagaaaaacaaaata 516
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 ttcttttgatcccgtgataccaagaaaaacaaaata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space:   458436
Effective search space used:   458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no367_n09.g1 MSMg01no367_n09.g1 CHROMAT_FILE:
MSMg01no367_n09.g1 PHD_FILE: MSMg01no367_n09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:06 2005
         (539 letters)



>mm_chr10_69867095_69868033
          Length = 939

 Score =  996 bits (515), Expect = 0.0
 Identities = 533/539 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgcttcctatgttaaacagcactagacactgagtgatggagacccaactttaggcaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgcttcctatgttaaacagcactagacactgagtgatggagacccaactttaggcaca 260

                                                                       
Query: 61  taaatgggaagaaatgaatgaacttggcatgaattcctacgaggagggtggcacaggtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaatgggaagaaatgaatgaacttggcatgaattcctacgaggagggtggcacaggtaa 320

                                                                       
Query: 121 gcctcagaaaccatcagaaccacagctctgcctaccagactctcctgctttctcctgccc 180
           |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 321 gcctcagaaaccatcagaaccacagccctgcctaccagactctcccgctttctcctgccc 380

                                                                       
Query: 181 agtgcctttgctacacttgcccacttaagattctgtcatctatatcatgtacctacatct 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 agtgcctttgctacacttgcccacttaagattctgtcgtctatatcatgtacctacatct 440

                                                                       
Query: 241 agtaaccctcgaaatagcattatcagcttcctgcctcgttacgtgttaaatgttgagtcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtaaccctcgaaatagcattatcagcttcctgcctcgttacgtgttaaatgttgagtcc 500

                                                                       
Query: 301 ccggctcaaattcaaatactgaactcataacccctggtgtgtctgtatctgcagatgggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 ccggctcaaattcaaatactgaactcataacccctggtgtgtctgtacctgcagatgggg 560

                                                                       
Query: 361 gctgtaaggaaggggtgtgggttaaataacgtctgacgggattaatatcttctttctaag 420
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 561 gctgtaaggaaggggtgtgggttagataacgtctgacgggattaatatcttctttctaag 620

                                                                       
Query: 421 aagatactccagagagttactcattctctgtctgcaaggagcacacaggatagccctgtg 480
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagagactccagagagttactcattctctgtctgcaaggagcacacaggatagccctgtg 680

                                                                      
Query: 481 gggacatgatactagctaatggatgcctacaagctacaaaaagaaccgtcccaggaaac 539
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gggacatgatactagctaatggatgcctacaagctacaaaaagaaccgtcccaggaaac 739


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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