BAC Information

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BAC

Clone NameMSMg01-368C08
Chromosome10 (Build37)
Map Location 91,889,260 - 91,889,842
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041799, LOC667203
Downstream geneLOC216229, LOC100041814, Nedd1, Gm872, 4930485B16Rik, EG667314, Pctk2, Elk3, LOC100041854
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368C08.T7 (MSMg01no368_c08.b1)MSMg01-368C08.TJ (MSMg01no368_c08.g1)
ACCAG475444AG475445
length757745
length of high quality
(start - end)
586 (45 - 630)511 (67 - 577)
definitionCHROMAT_FILE: MSMg01no368_c08.b1 PHD_FILE: MSMg01no368_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:30 2005CHROMAT_FILE: MSMg01no368_c08.g1 PHD_FILE: MSMg01no368_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAACTATTCTTGTTGTCCCCGATCAAGTGTACGGCACTCAATATGTT
CATGCTACAAACCCATCTATGAATCATCTTAGGCCATGCACGTTGCTCCT
GGCTGGTGGCAGCTGTGTCTCTGCTAACGGCCTCCTAAGCACAAGAGCCA
CTTTAATGAAGCAATTATTTGCATTAATCAAAGGCTTCAAGCGAATCTCT
CATGTGTGGCTGAATGGGAAAAGTGTATATTCACGCTGTGCTCAAATTAG
AGATTTCACAGAAAAAGGCATGCTTCAGTCAGATGTTGCTCCCAAGCTCC
CAGCCAATATCTCATTCACAGGCCAGCAACTTTGCTGAAGGATATCACTC
ATATACAAGTGAACTTAATAAAAGTGAATATACGGAAATAAGGGCATAGG
CATACTAGATAATTGAGCCATATTCGGGTTCTGCTGTCCTGAATCAGCTC
TAGAGGGCTAAGTGTAGAAATGAGAGATAATCAGCATAAACGAACACTTC
TTTGAACAGGTGGGATGTTAAGCTAAGCATTCTTGTCTTTTATTTGGTCT
AACACTGTGGGCAGAGACTTTGAACCCAGAGAAATAAAGCCACTTTCCTC
CTAAAGGTATAGATGATACCTATGTTCTAAAGGCATCATGGACACTCAAG
NAAGGAATCCCATAAAACACTGCCCTCTGGGCATCTGAAGCATTCCTTTT
TCCCTCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAGGATGGGATACCCTTTTTTTTTCCTTTTTATTA
GATATTTTCTTTATTTAGCATTTCAAATGCTATCACCTTTCCTGGTTTTC
CTTCCAAAAATCCCTTATGTCTCCCCCCACCCCTCACCAACCCACCCACT
CCCAGTTCCTGGCCCTGGCATTCTCCTACACTGGGGTACAGAACCTTCAT
AGGACCAAGTGCCTCTCATCCCATTAATGACCGACCAGGCCATCCTCTGC
TACATATGCAGCTGGTGCCACGAGTCCCACCATGTGTACTCTTTGGTTGG
TGGTTTAGTCCCTAGGAGCTCTGGAGTTACTGGTTAGTTCATATTGTTCC
TCCTATGGGCACACAAACCCCTTCAGCTCCTTGGGTCCTTCCTCTAGCTC
CTTTACTGGGGACCCGGTGCTCAGTCCAATGGTAGGCTGCAAGCATCCAC
CTCTGTATTTGTCAGGCACTGGTGGAGTCAGGATGTGATACCCTTGATCT
GAGTTGACCAATGCTCCTTTCTCAGTAGTCAGGAAGGAAGCCGGTACCTA
AGTCTTGCTGGCCTGCTTGGGTAAAGACAGGGAAAGGACATTCCTATCTC
CAGCAGGAAGTCTGTTTTGTTAACATGTTTGAACAAATATGTGAAATTGA
AGGATGTAATGAATCCCCAGGGTGGATTTTTTAACCTGGCGCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_c08.b1 MSMg01no368_c08.b1 CHROMAT_FILE:
MSMg01no368_c08.b1 PHD_FILE: MSMg01no368_c08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:30 2005
         (586 letters)



>mm_chr10_91889057_91890042
          Length = 986

 Score = 1112 bits (575), Expect = 0.0
 Identities = 581/583 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaactattcttgttgtccccgatcaagtgtacggcactcaatatgttcatgcta 63
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaactattcaagttgtccccgatcaagtgtacggcactcaatatgttcatgcta 263

                                                                       
Query: 64  caaacccatctatgaatcatcttaggccatgcacgttgctcctggctggtggcagctgtg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 caaacccatctatgaatcatcttaggccatgcacgttgctcctggctggtggcagctgtg 323

                                                                       
Query: 124 tctctgctaacggcctcctaagcacaagagccactttaatgaagcaattatttgcattaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tctctgctaacggcctcctaagcacaagagccactttaatgaagcaattatttgcattaa 383

                                                                       
Query: 184 tcaaaggcttcaagcgaatctctcatgtgtggctgaatgggaaaagtgtatattcacgct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcaaaggcttcaagcgaatctctcatgtgtggctgaatgggaaaagtgtatattcacgct 443

                                                                       
Query: 244 gtgctcaaattagagatttcacagaaaaaggcatgcttcagtcagatgttgctcccaagc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtgctcaaattagagatttcacagaaaaaggcatgcttcagtcagatgttgctcccaagc 503

                                                                       
Query: 304 tcccagccaatatctcattcacaggccagcaactttgctgaaggatatcactcatataca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tcccagccaatatctcattcacaggccagcaactttgctgaaggatatcactcatataca 563

                                                                       
Query: 364 agtgaacttaataaaagtgaatatacggaaataagggcataggcatactagataattgag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agtgaacttaataaaagtgaatatacggaaataagggcataggcatactagataattgag 623

                                                                       
Query: 424 ccatattcgggttctgctgtcctgaatcagctctagagggctaagtgtagaaatgagaga 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ccatattcgggttctgctgtcctgaatcagctctagagggctaagtgtagaaatgagaga 683

                                                                       
Query: 484 taatcagcataaacgaacacttctttgaacaggtgggatgttaagctaagcattcttgtc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 taatcagcataaacgaacacttctttgaacaggtgggatgttaagctaagcattcttgtc 743

                                                      
Query: 544 ttttatttggtctaacactgtgggcagagactttgaacccaga 586
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ttttatttggtctaacactgtgggcagagactttgaacccaga 786


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space:   562176
Effective search space used:   562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)