BAC Information

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BAC

Clone NameMSMg01-368E19
Chromosome10 (Build37)
Map Location 7,414,786 - 7,415,298
singlet/doubletsinglet
Overlap geneLats1
Upstream genePlekhg1, Iyd, Ppp1r14c, EG666520, LOC100039303, LOC670558, LOC626333, LOC666541, 9230019H11Rik, LOC100041405, LOC672213, Lrp11, Pcmt1, Nup43
Downstream geneKatna1, BC013529, Ppil4, LOC665035, Zc3h12d, Map3k7ip2, LOC100039046, Ust
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368E19.T7 (MSMg01no368_e19.b1)MSMg01-368E19.TJ (MSMg01no368_e19.g1)
ACCAG475560AG475561
length736762
length of high quality
(start - end)
470 (39 - 508)510 (73 - 582)
definitionCHROMAT_FILE: MSMg01no368_e19.b1 PHD_FILE: MSMg01no368_e19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:42 2005CHROMAT_FILE: MSMg01no368_e19.g1 PHD_FILE: MSMg01no368_e19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAT
GTGGATTCCGATACTGCTCTGTCTCCCGGGCATTTTTACCTCTCATTCAC
CACACCAAGCTCCAGCTGAGGCTGGGGAAGGGATATGGAGTGGAAGAGGA
TGTCAATCCTCTACCTGGTCTCAGTATCAAATTAATAAATTGTCAGAACA
TTGTGGGACTGTGGGTGCTGGTTTGTACTTCTCACATCTGCTCATATGAC
ATGAAAGTACTAAGTCATTGCAGGCTCTCTGCTGGCCTTAGAGGAGAGCA
CCGAGTCCAGCTGAGTCTCTCTGGGGCTGAATCGGGATGGTGAGTGTCAC
AGCTATAACCACCCAGAGCTGGGAGTCTGTCAAAGCAGGAACTCCTTTTA
TTGTATCAGTCTTTTGTTTATATAGGGTTGGGAAGGAGGTGGGCATTTTT
TTGGTGAGGTGAGATGACATAGCGGGTGGGGAAGAGTGATGGAGGGTATG
AGGTGNNNTGNNNTNNNNNTNNNTGNTNNGNTTNNTTTTTNNTTTTTTTT
TTTTTTTTTTTTTGTTNTTTTTGTTTTTTTTTNTGGGTTTTTTGTGTTGT
GTTTTTGTGTGTTNTTTTTTTTTTTTTTGGTGTTGTNGGTGTTTTTTTTT
TTTTTTTTGTTTTTTGTNTNGTGTTTTTTTGTTTTTTTGTTTTGTTTTTT
TTTTTGTTTTTGTTTNTGTTGTTTTTTTGTTTTTTG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCTGCCTCTGCCATACTTAGAATACAAG
GGATCTGACAGCTGACATCCTCTTCTGTCCTCTTCAGGCCCCAGGAACAC
CGGTGGTGCACACACACACAAATACATTTAATAATAATACTAATAATACA
GATGGCTCAGTGGTTAAGAGCACTGGCTACTCTTCCAGAGGACTCAGGTT
CAGCTCCCAGCAACCACATGGCAGCTCACAACTGCCTATAACTCCAGATA
AAATATAAATAAATAAATAAATAATATAATATAATATAATATAAGTATTT
ATTTGGTTCAGCTAGTATCTAACCTAAAAGTCTTCATCATATCTAGTCTA
AATATCTTTCTGTCATTCTGTATTGTTTCTATAAATATATCTTTTGAAAT
ATAAACCTAATTTTTTAAACAAATTATTCTTTTATGTATTTGGGTTTTGC
CTACATCTATGTCTGTGTACCATATGAATGCAGTGCCTGGGGAGGCCAGA
GGGGGCATGGGATCCCCTGGAACTGGAGGTACAGACAGCTGGGGAGTAAC
GTGTGGATGCTTGCAGTTCAACCCCAATTCTCTAGGAGAAAACCAGTGCT
CTTAAACACTGAGCTATTCTATCCAGTATCCCCACTCCCTTATTTTTCTC
CCTCCCCCCTTTTTTTTTAAGAAATAATTATTTTTGGATGTGACTAACCC
ATGTTGGTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_e19.g1 MSMg01no368_e19.g1 CHROMAT_FILE:
MSMg01no368_e19.g1 PHD_FILE: MSMg01no368_e19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:42 2005
         (510 letters)



>mm_chr10_7414588_7415498
          Length = 911

 Score =  969 bits (501), Expect = 0.0
 Identities = 510/513 (99%), Gaps = 3/513 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctgcctctgccatacttagaatacaagggatctgacagctgacatcctcttctgtcctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 cctgcctctgccatacttagaatacaagggatctgacagctgacatcctcttctgtcctc 258

                                                                       
Query: 61  ttcaggccccaggaacaccggtggtgcacacacacacaaatacatttaataataatacta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ttcaggccccaggaacaccggtggtgcacacacacacaaatacatttaataataatacta 318

                                                                       
Query: 121 ataatacagatggctcagtggttaagagcactggctactcttccagaggactcaggttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ataatacagatggctcagtggttaagagcactggctactcttccagaggactcaggttca 378

                                                                       
Query: 181 gctcccagcaaccacatggcagctcacaactgcctataactccagataaaatataaataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gctcccagcaaccacatggcagctcacaactgcctataactccagataaaatataaataa 438

                                                                       
Query: 241 ataa-ataa-ataatataatataatataatataagtatttatttggttcagctagtatct 298
           |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ataatataatataatataatataatataatataagtatttatttggttcagctagtatct 498

                                                                       
Query: 299 aacctaaaagtcttcatcatatctagtctaaatatctttctgtcattctgtattgtttct 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aacctaaaagtcttcatcatatctagtctaaatatctttctgtcattctgtattgtttct 558

                                                                       
Query: 359 ataaatatatct-tttgaaatataaacctaattttttaaacaaattattcttttatgtat 417
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ataaatatatctctttgaaatataaacctaattttttaaacaaattattcttttatgtat 618

                                                                       
Query: 418 ttgggttttgcctacatctatgtctgtgtaccatatgaatgcagtgcctggggaggccag 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ttgggttttgcctacatctatgtctgtgtaccatatgaatgcagtgcctggggaggccag 678

                                            
Query: 478 agggggcatgggatcccctggaactggaggtac 510
           |||||||||||||||||||||||||||||||||
Sbjct: 679 agggggcatgggatcccctggaactggaggtac 711


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 911
Length adjustment: 10
Effective length of query: 500
Effective length of database: 901
Effective search space:   450500
Effective search space used:   450500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)