Query= MSMg01no368_f14.b1 MSMg01no368_f14.b1 CHROMAT_FILE:
MSMg01no368_f14.b1 PHD_FILE: MSMg01no368_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:46 2005
(520 letters)
>mm_chr10_3477106_3478026
Length = 921
Score = 953 bits (493), Expect = 0.0
Identities = 514/521 (98%), Gaps = 1/521 (0%)
Strand = Plus / Plus
Query: 1 acctatggggaccattttcatttaaaccactacacaaggtcactgtgagtgtaagactca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 acctatggggaccattttcatttaaaccactacacaaggtcactgtgagtgtaaggctca 260
Query: 61 gaattttagctcttgttgatggcctgcttagtgtttgtggttttatgttgggctctgacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaattttagctcttgttgatggcctgcttagtgtttgtggttttatgttgggctctgacc 320
Query: 121 tcctctagaagagaaaatcatggcttttttttttt-acactgttcttaatacttatatct 179
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 tcctctagaagagaaaatcatggcttttttttttttacactgttcttaatacttatatct 380
Query: 180 aatggtagtgaatgaattttgaacattgtggaaagccgtgagcaatcgccatcatgagcc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatggtagtgaatgaattttgaacattgtggaaagccgtgagcaatcgccatcatgagcc 440
Query: 240 tccactgtgcctgcgtggcttaattggtaaacaagcaatgtgcgcatgtgcgagagtgtt 299
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 tccactgtgcctgcgtggcttaattggtaaacaagcaatgtgcacatgtgcgagagtgtt 500
Query: 300 ttcatgctaagtcacggcccatcccggggcgtggtgatgaggctctgggagagcagccaa 359
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcgtgctaagtcacggcccatcccggggcgtggtgatgaggctctgggagagcagccaa 560
Query: 360 tcaggtgtggacacgccacactaaggtgtatataagcagtgcctttttggtgctgggggt 419
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcaggtgtggacatgccacactaaggtgtatataagcagtgcctttttggtgctgggggt 620
Query: 420 cttcctcttcatgttgaaactggtgtaatgaagttgctgcagaaggatctggtttctcac 479
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 621 cttcctcttcatgttgaaactggtgtaataaagttgctgcagaaggatctggtttctcac 680
Query: 480 gtgtgtgttcttgctggcgagacaatagcacgtgtgagaat 520
|||||||||||||||||||||||||||||| ||||||||||
Sbjct: 681 gtgtgtgttcttgctggcgagacaatagcatgtgtgagaat 721
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 921
Length adjustment: 10
Effective length of query: 510
Effective length of database: 911
Effective search space: 464610
Effective search space used: 464610
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no368_f14.g1 MSMg01no368_f14.g1 CHROMAT_FILE:
MSMg01no368_f14.g1 PHD_FILE: MSMg01no368_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:46 2005
(531 letters)
>mm_chr10_3552282_3553212
Length = 931
Score = 1027 bits (531), Expect = 0.0
Identities = 531/531 (100%)
Strand = Plus / Minus
Query: 1 tctgatactcaaaacctcctcaaataagacaatcaagactttcagctgtgtattacatgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 tctgatactcaaaacctcctcaaataagacaatcaagactttcagctgtgtattacatgc 672
Query: 61 agcagcaagttcaccacacaaatggagtgttgtgaaagcaagggacactccaataattcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 agcagcaagttcaccacacaaatggagtgttgtgaaagcaagggacactccaataattcc 612
Query: 121 ctcattgctttggcaccagatagctaggtgtaccacaaacattcaaaaaacagacatggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ctcattgctttggcaccagatagctaggtgtaccacaaacattcaaaaaacagacatggc 552
Query: 181 ttattttattttgtatattggagtaaaactatcaaaattaacttgatttccatatatttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ttattttattttgtatattggagtaaaactatcaaaattaacttgatttccatatatttt 492
Query: 241 taaagacagtgggttaagtaaaattagaattgtgagacaggaacatagaatgtctgggag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 taaagacagtgggttaagtaaaattagaattgtgagacaggaacatagaatgtctgggag 432
Query: 301 cataatttaggattctgttccattatctggggtctcaccattcattaccaatgaagttct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 cataatttaggattctgttccattatctggggtctcaccattcattaccaatgaagttct 372
Query: 361 aaaatagaggagaaattacctaataaatagtaactagcctatagctacaccatcacaatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 aaaatagaggagaaattacctaataaatagtaactagcctatagctacaccatcacaatg 312
Query: 421 atttcataactacatttagcacattttagaagccattttaagcaacaaaatctttgttct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 atttcataactacatttagcacattttagaagccattttaagcaacaaaatctttgttct 252
Query: 481 aatttttaatagtgcgtttatcaaggctctgcctgcaacttgatggctcta 531
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 aatttttaatagtgcgtttatcaaggctctgcctgcaacttgatggctcta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space: 479841
Effective search space used: 479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
