BAC Information

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BAC

Clone NameMSMg01-368I23
Chromosome10 (Build37)
Map Location 66,440,051 - 66,440,510
singlet/doubletsinglet
Overlap genenone
Upstream gene1700023F02Rik, 4930407I19Rik
Downstream geneReep3, Jmjd1c, Nrbf2, Egr2, Gm237, LOC100040081, LOC100039618, Zfp365
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368I23.T7 (MSMg01no368_i23.b1)MSMg01-368I23.TJ (MSMg01no368_i23.g1)
ACCAG475755AG475756
length736761
length of high quality
(start - end)
566 (66 - 631)461 (77 - 537)
definitionCHROMAT_FILE: MSMg01no368_i23.b1 PHD_FILE: MSMg01no368_i23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:02 2005CHROMAT_FILE: MSMg01no368_i23.g1 PHD_FILE: MSMg01no368_i23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGGAGGCGCGGAATTCA
AGGCCCATTCCTAAACATAATAAAAGCAATCTACAGCAAACCAGTAGCCA
ACATCAAAGTAAATTGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGG
ACTAGACAAGGCTGCCCACTTTCTCCCTACCTACTCAATATAGTACTTGA
AGTCCTAGCCAGAGCAATTCGACAACAAAAGGTGGTCAAGGGGATACAAA
TTGGGAAGGAAGAAGTCAAAATATCACTATTTGCAGAAGATATGATAGTA
TATATATCCCTAAAAATTCCTTCTTAGAACTCCTAAACCTGATAAACAGC
TTCAGTGCAGTAGCTGGATATAAAATTAACTCAAATAAATCAATGGCCTT
TCTCTACACAAAGGATAAATGGGCTGAAAACGAAATTAGGGAAACAACAC
CCTTCACAATAGTCACAAAAAATATAAAATACCTTGGTGTGATTTAACTA
AGGAAGTGAAAGATCTGTATGACAAGAACTTCAAGTCTCTGAAGAAAGAA
ATTGAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGG
CAGGATTAATATGGTAATAATGGCTATCCTGCCAAAAGCAATCTACAGAT
TCAATGCAATCCCCATCAAAATTCTAACTCAATTCTTCACTGAGTTAGAA
AGGGCNATTTACAAATTCATTTGGGATAATAAAAAA
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATGTGGGTCATAGACAAATAGGCA
GGTGAAACATCCACAGGTGTAAACATAATTAAATAAGAAAGCAGAGAAAT
GTAGGTACGCACAGCCTCTAGGCAATAGAGGTAGGCTGATGTTTGCAACT
TCAAGGCAACCTGATCTACAATGGGAATTCCAGGCCAGTCAGGACTACAC
CTCACACCTGTTGAGATTTCATCTGGAGATCCACCATCCCCAGAGTACAA
GCGACACTCATCAGCAGGTCCTCATCATCATGTCCTTCTGTTCTTCTGTG
TCCTTCTGTTCTTCTGTCCTTCCAGTCTGATCAGACCACTCACCTGGGCC
TGATGTAGAACAGTTGTTCTCAGATGCGAGTGCTCCCTTGCTTCTTCCAT
GTCTTAGAAACAGCTCAGCAGACCAGGGCATTGGACACCTCCAGTGTTCC
TCTCCTCTGTGCTTTAAGGAATATGTTTCATCTTAAAAACATTTTTATCT
CTGTCTGGTTTAAGGGCTAAAATAATGTCCCAACTGTTGTCAGGGAACAT
GCAGTAATCAGGCTGCCATCTCCAAAATTACTTCCCTTGAAAAGGGACCG
GGAATCCCCTAGAAGAATGCCATTTCCAATCCCCAAAAAGAAATGGATTG
TTCCAAAAATTTGGCCCCTCCAAAAAAAATTATAAGGGTTATTTTACAGG
GACCAGGGGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_i23.g1 MSMg01no368_i23.g1 CHROMAT_FILE:
MSMg01no368_i23.g1 PHD_FILE: MSMg01no368_i23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:02 2005
         (461 letters)



>mm_chr10_66439678_66440537
          Length = 860

 Score =  845 bits (437), Expect = 0.0
 Identities = 455/461 (98%), Gaps = 1/461 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgtgggtcatagacaaataggcaggtgaaacatccacaggtgtaaacataattaaataa 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 833 atgtgggtcatagacaaataggcaggtgaaacatccacacgtgtaaacataattaaataa 774

                                                                       
Query: 61  gaaagcagagaaatgtaggtacgcacagcctctaggcaatagaggtaggctgatgtttgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 gaaagcagagaaatgtaggtacgcacagcctctaggcaatagaggtaggctgatgtttgc 714

                                                                       
Query: 121 aacttcaaggcaacctgatctacaatgggaattccaggccagtcaggactacacctcaca 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| 
Sbjct: 713 aacttcaaggcaacctgatctacagtgggaattccaggccagtcaggactacacctcacg 654

                                                                       
Query: 181 cctgttgagatttcatctggagatccaccatccccagagtacaagcgacactcatcagca 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 653 cctgttgagatttcatctggagatccaccatccccagagtacaag-gacactcatcagca 595

                                                                       
Query: 241 ggtcctcatcatcatgtccttctgttcttctgtgtccttctgttcttctgtccttccagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 ggtcctcatcatcatgtccttctgttcttctgtgtccttctgttcttctgtccttccagt 535

                                                                       
Query: 301 ctgatcagaccactcacctgggcctgatgtagaacagttgttctcagatgcgagtgctcc 360
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 534 ctgatcagaccactcacctgggcctgatgtagcacagttgttctcagatgcgagtgctcc 475

                                                                       
Query: 361 cttgcttcttccatgtcttagaaacagctcagcagaccagggcattggacacctccagtg 420
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 474 cttgcttcttccatgtcttagaaacggctcagcagaccagggcattggacacctccagtg 415

                                                    
Query: 421 ttcctctcctctgtgctttaaggaatatgtttcatcttaaa 461
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ttcctctcctctgtgctttaaggaatatgtttcatcttaaa 374


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 860
Length adjustment: 10
Effective length of query: 451
Effective length of database: 850
Effective search space:   383350
Effective search space used:   383350
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)