BAC Information

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BAC

Clone NameMSMg01-368J21
Chromosome10 (Build37)
Map Location 22,680,499 - 22,681,020
singlet/doubletsinglet
Overlap genenone
Upstream geneSgk, LOC667254, LOC665523, 4930444G20Rik, LOC100039992, E030030I06Rik, LOC665543, Ube2q2l, Raet1e, LOC100040023, LOC100038830, LOC667280, EG667281, LOC432438, Raet1d, LOC667299, LOC667303, LOC100040072, LOC100040078, Slc2a12, Tbpl1, Tcf21
Downstream geneEya4, Rps12, 1110021L09Rik, Vnn3, Vnn1, Taar1, Taar2, Taar3, Taar4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368J21.T7 (MSMg01no368_j21.b1)MSMg01-368J21.TJ (MSMg01no368_j21.g1)
ACCAG475799AG475800
length748755
length of high quality
(start - end)
655 (46 - 700)522 (68 - 589)
definitionCHROMAT_FILE: MSMg01no368_j21.b1 PHD_FILE: MSMg01no368_j21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:06 2005CHROMAT_FILE: MSMg01no368_j21.g1 PHD_FILE: MSMg01no368_j21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCTGATGACTACCGAATGGCAGAGAAGCACCTGAAAAAATGTT
CAATATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTC
CACCTCACACCAGTCTGAATGGCTAAGATCAAAAATTCAGGTGACAGCAG
ATGCTGGCATGGATGTGGAGAAAGAGGATCACTCCTCCATTGTTGGTGGG
ATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTTCTCAGA
AAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCAT
ATATCCAGAAGATGCCCCAACTGGTAAGAAGAACACATGCTCCACTATGT
TCATAGCAGCCTTTTTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGC
CCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGA
GTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAAT
GGATGGACCTAGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGG
ATCTCACACAATATGTACTCACTGAAAAGTGGACATTAGCCCCAAACCTA
GGATACCCAAGATATAAGATACAATTTGCTAAACACATTAAACTCAAGAA
GAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGAAATGGGAA
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTAGTTGAGAGTTTCAATCCTAATGCCTAGACA
GATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGA
TAGGCAGATTACTCTTTAGATCAAGCATGCCAAAATTCATGTGATTTTTG
GCTAATGAAGTCTTTATTATAACTTTAAATCTAAATGCAAATACTATACC
ATGCTTGAAAAGTGGATGTTGGATGGTGTCAGAATTTGGAACATCGTACT
GTAAAGATAAATATGAAAAGCCTTGGGGTTCACCATGAAAAATGAGCCAA
CCCAATTATTCATGGGAATATATATCTCTTAGATGGCTAATAAATAATGA
GTGTTATTTATGAAGTGAACAATAGATTATCTAAGAGCACACCCCATAAA
TATGTAGTCTTAATGGGCTTACCTTGTAAGCATTAATTAATAAAGATTCT
AAATGGTTATTACTAATTTGCTAACCTGAGATCAATCTTAGACATGGAGA
ATGAAAGGTACCTGGAATCACTGAGCAGCCCTGGAGTGCGCCCTCCACTG
TGCTGTAAGAAGGGTGGGGGGTGGGTTGATGCCTCTTATGCTAAGATCAT
TGATAGTGACCTATAAGAAGTAAACTTTGCAATGTAAACTGTCCGCTTAC
CCCTTAAAAGAAAATAATTCCCAAAATGCTACCGGTCCTAAATAAATTCT
TTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_j21.g1 MSMg01no368_j21.g1 CHROMAT_FILE:
MSMg01no368_j21.g1 PHD_FILE: MSMg01no368_j21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:06 2005
         (522 letters)



>mm_chr10_22680207_22681128
          Length = 922

 Score = 1002 bits (518), Expect = 0.0
 Identities = 521/522 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctagttgagagtttcaatcctaatgcctagacagatagatagatagatagatagatagat 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 814 ctagttgagagtttcaatcctaatgcctagacagacagatagatagatagatagatagat 755

                                                                       
Query: 61  agatagatagatagatagatagataggcagattactctttagatcaagcatgccaaaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 agatagatagatagatagatagataggcagattactctttagatcaagcatgccaaaatt 695

                                                                       
Query: 121 catgtgatttttggctaatgaagtctttattataactttaaatctaaatgcaaatactat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 catgtgatttttggctaatgaagtctttattataactttaaatctaaatgcaaatactat 635

                                                                       
Query: 181 accatgcttgaaaagtggatgttggatggtgtcagaatttggaacatcgtactgtaaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 accatgcttgaaaagtggatgttggatggtgtcagaatttggaacatcgtactgtaaaga 575

                                                                       
Query: 241 taaatatgaaaagccttggggttcaccatgaaaaatgagccaacccaattattcatggga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 taaatatgaaaagccttggggttcaccatgaaaaatgagccaacccaattattcatggga 515

                                                                       
Query: 301 atatatatctcttagatggctaataaataatgagtgttatttatgaagtgaacaatagat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 atatatatctcttagatggctaataaataatgagtgttatttatgaagtgaacaatagat 455

                                                                       
Query: 361 tatctaagagcacaccccataaatatgtagtcttaatgggcttaccttgtaagcattaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tatctaagagcacaccccataaatatgtagtcttaatgggcttaccttgtaagcattaat 395

                                                                       
Query: 421 taataaagattctaaatggttattactaatttgctaacctgagatcaatcttagacatgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 taataaagattctaaatggttattactaatttgctaacctgagatcaatcttagacatgg 335

                                                     
Query: 481 agaatgaaaggtacctggaatcactgagcagccctggagtgc 522
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 agaatgaaaggtacctggaatcactgagcagccctggagtgc 293


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space:   466944
Effective search space used:   466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)