BAC Information

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BAC

Clone NameMSMg01-368K06
Chromosome10 (Build37)
Map Location 126,701,600 - 126,701,730
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668336, Xrcc6bp1, LOC622567, Ctdsp2, Avil, Tsfm, Mettl1, Cyp27b1, March9, Cdk4, Tspan31, Centg1, Os9, LOC100043028, B4galnt1, LOC100043035, C78409, D10Ertd610e, Dtx3, Pip5k2c, Kif5a
Downstream geneDctn2, Mbd6, LOC100043045, Ddit3, Mars, LOC622075, Arhgap9, Gli1, Inhbe, Inhbc, R3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368K06.T7 (MSMg01no368_k06.b1)MSMg01-368K06.TJ (MSMg01no368_k06.g1)
ACCAG475817AG475818
length546675
length of high quality
(start - end)		132 (98 - 229)129 (77 - 205)
definitionCHROMAT_FILE: MSMg01no368_k06.b1 PHD_FILE: MSMg01no368_k06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:08 2005CHROMAT_FILE: MSMg01no368_k06.g1 PHD_FILE: MSMg01no368_k06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCTTCCGNTTGTAGGGGNGCCTNNNTTCTATAAXXXXXXXXXXXXXXX
XXXXXXXXXXTTCCAGAAATCCGCGGAATTCTTGCCTCTTTCCACTGTCA
TTTTGAAGTCACTAAGGATGCCACCTTCTTGTCTCTAGAGGCTGGACGTT
GGTATATTTCCTGAGCTTGCAAGATGCTGCAACCTTCAGAAACAGTGCCA
AACGACCGAGGGTAGCGTTCCTGAATTANNGAACTCGCCATTTCTCATTC
CCTGGGCTTTCTGCCCCAAGGCCTCGGGCCTCTGTTCAACATTGATTCTC
CCAGGTCCATGTAATTGGGGCCTTCCCTTTCCGGTGGGGTTTCCCTTTAA
NAAAGTCCAAAAAAAGGGGGGGAACTATTTTTTTTTTTTTCCCAAGGTTT
CTAAATTTGGGGAAATTCTGGGGCCCGGGGTTAAAAGGGGCTTTTGGGTT
TTTGGGGCCCAAAAGGGGCCCCCTGGTGGGGCCCCCCCCCCCCCAAAAAC
CCCTTTTCTCCCCCCCCCCTTTTTATTTTGTTTAAAACCTCCTTAA

CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTCTCAGGCCTAGACCTCCACAG
ATTCCAGCATGACAATACATAGAGCAACAGGCCAAACCTCAACAGGTACA
TGCCCCTCACCAAAATAAATAAACATAGTTGNTTTTTTACAATGTNGAAA
CCATNGGAACTAAGAGAGAAGGCTGAACATTTAAAAGAACATCCTTCTGC
TGCAGAGGATCTGAGTTCAGTTCACAGCAACTATGTTGAACAACTCACAA
CTACCTGTAACTACAACTTCAGGGGATCCAGCGCCCTCTTCTGGTCTCCA
CAGGCAGATGCACTTATGTGCACAGACACACATGAATGCACACATAATTT
TAAAAATAGAGAATCCATATCAATAAACGTTTTATTCTCTAGTATATTAG
AATCTTTCTTGTGTGGCTCANGATATTTCATAAAGGCCATATATTAGATA
AAAAGTTCCATATGTATTTATAAAATATTAAGACAAATTTTTTATACATC
ACCATTCCTACTTCTTGACGTCGGGAAAAAAATAAAGCACTGCTGTTTGA
ACAAAAATGGATGTCCACCCTAAACAAAAAAATGGCTACCTTTGAATATA
AAATAGCCTTAACCCTTAATAATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_k06.b1 MSMg01no368_k06.b1 CHROMAT_FILE:
MSMg01no368_k06.b1 PHD_FILE: MSMg01no368_k06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:08 2005
         (132 letters)



>mm_chr10_126701400_126701931
          Length = 532

 Score =  253 bits (131), Expect = 2e-72
 Identities = 131/131 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcattttgaagtcactaaggatgccaccttcttgtctctagaggctggacgttggtatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tcattttgaagtcactaaggatgccaccttcttgtctctagaggctggacgttggtatat 272

                                                                       
Query: 61  ttcctgagcttgcaagatgctgcaaccttcagaaacagtgccaaacgaccgagggtagcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ttcctgagcttgcaagatgctgcaaccttcagaaacagtgccaaacgaccgagggtagcg 212

                      
Query: 121 ttcctgaatta 131
           |||||||||||
Sbjct: 211 ttcctgaatta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 132
Length of database: 532
Length adjustment: 8
Effective length of query: 124
Effective length of database: 524
Effective search space:    64976
Effective search space used:    64976
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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