Query= MSMg01no369_a12.b1 MSMg01no369_a12.b1 CHROMAT_FILE:
MSMg01no369_a12.b1 PHD_FILE: MSMg01no369_a12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:39 2005
(478 letters)
>mm_chr10_49028097_49028974
Length = 878
Score = 634 bits (328), Expect = 0.0
Identities = 334/336 (99%)
Strand = Plus / Minus
Query: 143 ttgttttaaacaataagtcatttgattcagggtatccggttttgtccactgtgtatttca 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 ttgttttaaacaataagtcatttgattcagggtatccggttttgtccactgtgtatttca 819
Query: 203 gtgattatcataacacagtctaggcatcatcctgtagctctatccacatcttctgaaagc 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 gtgattatcataacacagtctaggcatcatcctgtagctctatccacatcttctgaaagc 759
Query: 263 tcatgagagaaactgttagaggcttttgggaattctgtctgtcataaacttaataattaa 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 tcatgagagaaactgttagaggcttttgggaattctgtctgtcataaacttaataattaa 699
Query: 323 caaactcctgacaggattgaacacgatataaattggttataactgaatagaatttaataa 382
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 698 caaactcctgacaggattgaacacgatataaattggttataactgaatagaatgtaataa 639
Query: 383 cagtagtaaaagtctatcaagacaggataggaaagacaatcttaagtaactttaataggt 442
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 638 cagtagtaaaagtctatcaagacaggataagaaagacaatcttaagtaactttaataggt 579
Query: 443 tgtgtaagccatgggaatggctaaactgtggaactg 478
||||||||||||||||||||||||||||||||||||
Sbjct: 578 tgtgtaagccatgggaatggctaaactgtggaactg 543
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space: 406224
Effective search space used: 406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no369_a12.g1 MSMg01no369_a12.g1 CHROMAT_FILE:
MSMg01no369_a12.g1 PHD_FILE: MSMg01no369_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:39 2005
(487 letters)
>mm_chr10_48851247_48852136
Length = 890
Score = 812 bits (420), Expect = 0.0
Identities = 472/491 (96%), Gaps = 5/491 (1%)
Strand = Plus / Plus
Query: 1 aggggcagggaaagtctaatttctcagacctgtttcaaatttgccattacaaaaaagtta 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggggcaggcaaagtctaatttctcagacctgtttcaaatttgccattacaaaaaagtta 260
Query: 61 tagtattttattggttaatttatttccccagacacatatgactccttgacaatgtctaaa 120
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagtatttt-ttcgttaatttatttccccagacacatatgactccttgacaatgtctaaa 319
Query: 121 aa-tctaagtaatgaaagagaaggaaataactaaatggaagtaaaagtgaaagctccttt 179
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aaatctaagtaatgaaagagaaggaaataactaaatggaagtaaaagtgaaagctccttt 379
Query: 180 ctctgacatagtagaatacaatgctgtcattgaagattaaagttgctaaagatataagtc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctctgacatagtagaatacaatgctgtcattgaagattaaagttgctaaagatataagtc 439
Query: 240 agactcctagggaattcttggaggagctctaaattttccataacctaagcctatattcta 299
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 440 agactcctagggaattcctggaggagctctaaattttccataacctaagcctgtattata 499
Query: 300 ttctagtctatgcatttatctctaactctctaagacaaaagaaagaatacctttttttct 359
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttatattctatgcatttatctctaactctctaagacaaaagaaagaatacctttttttct 559
Query: 360 catgcccaaatatattcctttaaaattttttgatggtagcttatgggtaaataagatttt 419
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 560 catgcccaaatatattcctttaaaatattttgattgtagcttatgggtaaataagatttt 619
Query: 420 aaactctgtanatgcaataataataat---cttcagtgtgattgattatgataaagaacc 476
||||| |||| ||| |||||||||||| ||||| |||||||||||||||||| |||||
Sbjct: 620 aaactatgtaaatgtaataataataatagtcttcaatgtgattgattatgataaggaacc 679
Query: 477 aaataactatt 487
|||||||||||
Sbjct: 680 aaataactatt 690
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 890
Length adjustment: 10
Effective length of query: 477
Effective length of database: 880
Effective search space: 419760
Effective search space used: 419760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
