BAC Information

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BAC

Clone NameMSMg01-369A17
Chromosome10 (Build37)
Map Location 14,695,182 - 14,695,738
singlet/doubletsinglet
Overlap genenone
Upstream geneHivep2, Gpr126, LOC100039571, LOC100039409, Vta1, D230044M03Rik, EG666904, Nmbr, LOC666917
Downstream geneLOC637043, LOC100039492, LOC671439
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369A17.T7 (MSMg01no369_a17.b1)MSMg01-369A17.TJ (MSMg01no369_a17.g1)
ACCAG476127AG476128
length745738
length of high quality
(start - end)
569 (39 - 607)554 (72 - 625)
definitionCHROMAT_FILE: MSMg01no369_a17.b1 PHD_FILE: MSMg01no369_a17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:40 2005CHROMAT_FILE: MSMg01no369_a17.g1 PHD_FILE: MSMg01no369_a17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTCCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCA
AAGAAGTAGGTTTCTATACCAGAGAAGGAATGTATATGCTTGCAAGGCGA
GGGTAAACAGGCAAAGGAAAATTTTTTTTTCCTTCTTCCATGTCCTTACA
TAGGCTTCCAGCAGGTGTCATCAATATTAAAGGTGTGCCTCCCCATTTCA
AGATTCAGATTAAAGGTATGCCTCAAAGGTCCAGACAAGACTTAGATTCA
CACATTTAAAACCAAGCCAAAACCAAACCAAACCAAACCAAACCAAACCA
AACCAAACCAAACCAAACCAAACCAAACCAAACCAAACAAACCAAAACCA
AAACCAAACAAAACCAAACAAACAAATAAAAACCTCTTACAGGTGTGCTC
TTCATTTCCAGACTGTAGTTCACTCCAGATATAGTCAAGTTGACAACAAA
AAAATAGCCATCACAATGAGATTGTCAGAAAAAGAAGTAAGAAAAAATTC
ACTCAGGATGAATAACTGTGATTGAAATAGACATGCTGCCTAATAGTGTT
TAGGAGATAAAAGGGAGTATGGGGTGTTACATTCTTAATTAATGGGCTGG
AATGACATGCCTTCTAGGGACAGGCAAGGCAGAATCGTGGCTCAATGCCC
CAGTGTATGGTAATGGTAAGGCTAGTAATCAGGAGCTGAATGTTTTGCGA
GTAGTTGGAGGGGTTAACTGTTTATTCCCTCTCTTTCGTTTCCTN
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGGTACATTTGCAAGATAAATGTTCTAAG
TGGCATTTCATTTAGTTGCTTACCAATTGGATAGATAGATAGATGATAGA
TAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATA
GATAGAGATATATGTACATTGTATACTATATGTTATTACATTGAATATAT
CAAACAATGTAATTATAAAGATATAATACACATATTTATATATAAATAAT
ACATAATATAAAATATTATATATAATATATGTATTTTATTTACAATTACA
TTGTTTTATTTATTCAATGTATTTATACAATGTATACAATATAACATATT
GAATATAATATAATATTATAATAATTATATCATATAATATCATATTATAT
TATATTATGATATTGACAGACCCTAGAGTCTACTAGGAAGAAGGAAAAGC
AAATGAAATAAAATGCCTCCATTAGATTGGCCAATAAGAGTCTTTGGAGC
ATTCCCTGGTTTAATGACTGATGTAGAACCTCCCAGGCACCTGTGGGCAG
TACCACATGAAGGTAGGGGCTCCTACAATGTATAAGATTGTTGGATGTTA
GCCTTAAAGCAGAACAGTACGCAACATTTCTCCATGGCCGGGACATTAGT
TCCTGCCTCCAGTTCCTGCCCTGAGTTCAAGTCATAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_a17.b1 MSMg01no369_a17.b1 CHROMAT_FILE:
MSMg01no369_a17.b1 PHD_FILE: MSMg01no369_a17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:40 2005
         (569 letters)



>mm_chr10_14694970_14695938
          Length = 969

 Score =  980 bits (507), Expect = 0.0
 Identities = 549/571 (96%), Gaps = 19/571 (3%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccaaagaagtaggtttctataccagagaaggaatgtatatgcttgcaaggcgag 63
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 213 ggaattccaaagaagtaggtttctataccagagaagcaatgtatatgcttgcaaggcgag 272

                                                                       
Query: 64  ggtaaacaggcaaagg---aaaatttttttttccttcttccatgtccttacataggcttc 120
           ||||||||||||||||   ||||  |||||||||||||||||||||||||||||||||||
Sbjct: 273 ggtaaacaggcaaaggaaaaaaa--tttttttccttcttccatgtccttacataggcttc 330

                                                                       
Query: 121 cagcaggtgtcatcaatattaaaggtgtgcctccccatttcaagattcagattaaaggta 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 331 cagcaggtgtcatcaatattaaaggtgtgcctccccatttcaagattcagcttaaaggta 390

                                                                       
Query: 181 tgcctcaaaggtccagacaagacttagattcacacatttaaaaccaagccaaaaccaaac 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||         
Sbjct: 391 tgcctcaaaggtccagacaagacttagattcacacatttaaaaccaagcca--------- 441

                                                                       
Query: 241 caaaccaaaccaaaccaaaccaaaccaaaccaaaccaaaccaaaccaaaccaaaccaaac 300
            ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 -aaaccaaaccaaatcaaaccaaaccaaaccaaaccaaaccaaaccaaaccaaaccaaac 500

                                                                       
Query: 301 -aaaccaaaaccaaaaccaaac-aaaaccaaacaaacaaataaaaacctcttacaggtgt 358
            |||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 501 caaaccaaa-ccaaa-ccaaaccaaaaccaaacaaacaaataaaaacctcttacaggtgt 558

                                                                       
Query: 359 gctcttcatttccagactgtagttcactccagatatagtcaagttgacaacaaaaaaata 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gctcttcatttccagactgtagttcactccagatatagtcaagttgacaacaaaaaaata 618

                                                                       
Query: 419 gccatcacaatgagattgtcagaaaaagaagtaagaaaaaattcactcaggatgaataac 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gccatcacaatgagattgtcagaaaaagaagtaagaaaaaattcactcaggatgaataac 678

                                                                       
Query: 479 tgtgattgaaatagacatgctgcctaatagtgtttaggagataaaagggagtatggggtg 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tgtgattgaaatagacatgctgcctaatagtgtttaggagataaaagggagtatggggtg 738

                                          
Query: 539 ttacattcttaattaatgggctggaatgaca 569
           |||||||||||||||||||||||||||||||
Sbjct: 739 ttacattcttaattaatgggctggaatgaca 769


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 81
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space:   536081
Effective search space used:   536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)