BAC Information

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BAC

Clone NameMSMg01-369I12
Chromosome10 (Build37)
Map Location 93,596,862 - 93,793,903
singlet/doubletdoublet
Overlap geneFgd6, Nr2c1, Ndufa12, EG215472, LOC100041955
Upstream geneEG667314, Pctk2, Elk3, LOC100041854, Lta4h, Hal, Amdhd1, Ccdc38, Snrpf, LOC100041873, Ntn4, LOC667338, LOC100041907, Usp44, Metap2, Vezt
Downstream geneTmcc3, EG667315, 4921537D05Rik, Plxnc1, Cradd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369I12.T7 (MSMg01no369_i12.b1)MSMg01-369I12.TJ (MSMg01no369_i12.g1)
ACCAG476494AG476495
length853786
length of high quality
(start - end)
179 (59 - 237)247 (76 - 322)
definitionCHROMAT_FILE: MSMg01no369_i12.b1 PHD_FILE: MSMg01no369_i12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:17 2005CHROMAT_FILE: MSMg01no369_i12.g1 PHD_FILE: MSMg01no369_i12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,596,862 - 93,597,040)(93,793,657 - 93,793,903)
sequence
GCGGCCGCTATACGACTCCTATTTCGAGAGGATCCGCGGAATTCACCCTG
ATCCGGAGAAGACACCACTGCAGGGCCTGTGGGAAGGTCAGAGGGGCAGC
GGCTGTCCCTGTCGTGATGTGTGTGGCTCTGGGCTATGCACAGTGAGGAA
GGACTTCCCTCAGAAGTCACTGTAGTACACAAACCAGGAAGGGCAGTGCT
AGTGAAGGCAGAGATGTCGTCTGATCTGTGTTTGGAGTTGTTTATGGCGA
ATATTGTTATGCACTCTTCTTCCTCTTCTCTCTGTCTATGATTTACTTTG
CCTTATTTTTTTTTTTCTTTAAGCTTACTACTTTTGGACTTGCAATATTG
TCCCTCACCATATTCCTGTTTCTGTTTGTCTATCCTTTTCTTTCCCTTTG
CTTCTTTTTCCCCCCCCTTATTCTTTCATTCTGTTCCATCCTTTCTTTTT
CCTGTTCTCTTTATTTTACCCCTCCCTCACCCTTTTTTGCCTTTTTGTTC
TTTTTCTTTTTTTTCCCTTCCCGTTCTTTTCCCTCCCTCTTCCATTCTTC
CTTTCTCTCTCCTTTTATATTTTTCTTCTATTTACTCTCTCTCTTCTTTC
TTTTTTTTCTCTTAGATATTATTCCCTTTTAATCATGATTAATTTCCTCT
CTTTTCTTCCTTTTACTTTATCTTTCTCTCTTATCAACTTTCTTCTTTTT
TTCTCTCTCTTTTTTTTTCCTTCTTCTCTTCCCGTCTCCTTTTTCTCCTC
CCTCTCATCCCATCGTTCTTATTATTTTTTTCCCTGTTCTCTTTACGCTC
CTCCGCTTTCCGCCCCCTCCGTTCTTGTATTTTCTTTTTTTTTTTCCCCC
CCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTGAGACTCTGTAAAATAAAAGTG
GCTGTGCTTACAGCTCAGAGGGAGAGGGCCTGCCTGTGGATGAGCCCCTG
GATTGAATCCCCAACACCACACCCAAAGTGTAGCGAAGGGAAGAAGGTGT
GGACAAGAAACCACCCATAAATAAAGAACAGCAGGACTGTACAGAGTGAA
CAGTAATTCACGAATATCCGTTACAAGAAGCATGATGGCGCGCTTTGGAT
AAGGACAGGGGAAAGGTCAAGGTTTTTGGGGTAAGCTTGAGACAAGAAAT
GGATCTCCAAGGGGATACTCAGGTCTAGCTTCCTACTTAAAATCATCTTC
CCGAGGCTGGGGACGCGCCTTGGTGGTAAAGCACTTACCCATTAGGTGTG
AGGCCCTGGGCTCGGTTTCCATCACTAATAAGAATAGTTTGCTTTCATTT
TCCTGGATCTTCTCCTTGTCTTGGATCACTGGGTTTTCCTCTATTTCTTA
TTCCCAGCGTGCTTTGTTTTTTGCCTTCACTTCCCCTTATATTTCAATTT
GTTTCTTCTTGATCCCTTACTGTTTTTTTTTTTACTGTTTTTTTTCCCTT
TGTTTCCTTTTCTCCTATTTCTTCTTCTTTTTTTCCCCCACTTTTATTTT
TCTTCCCTTTTCTCTTCTACTTTCCTTTTTTTACCCCTTTCCACATTATT
CCTTTTCCTCCCCCCTCCTTCTTTTTTTCCCTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_i12.b1 MSMg01no369_i12.b1 CHROMAT_FILE:
MSMg01no369_i12.b1 PHD_FILE: MSMg01no369_i12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:17 2005
         (179 letters)



>mm_chr10_93596662_93597240
          Length = 579

 Score =  331 bits (171), Expect = 2e-95
 Identities = 177/179 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagacaccactgcagggcctgtgggaaggtcagaggggcagcggctgtccctgtcgtgat 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 aagacaccactgcagggcctgtgggaaggtcagaggggcagcggttgtccctgtcgtgat 260

                                                                       
Query: 61  gtgtgtggctctgggctatgcacagtgaggaaggacttccctcagaagtcactgtagtac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 gtgtgtggctctgggctatgcacagtgaggaaggacttccctcagaagttactgtagtac 320

                                                                      
Query: 121 acaaaccaggaagggcagtgctagtgaaggcagagatgtcgtctgatctgtgtttggag 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaaaccaggaagggcagtgctagtgaaggcagagatgtcgtctgatctgtgtttggag 379


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 179
Length of database: 579
Length adjustment: 8
Effective length of query: 171
Effective length of database: 571
Effective search space:    97641
Effective search space used:    97641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no369_i12.g1 MSMg01no369_i12.g1 CHROMAT_FILE:
MSMg01no369_i12.g1 PHD_FILE: MSMg01no369_i12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:17 2005
         (247 letters)



>mm_chr10_93793457_93794103
          Length = 647

 Score =  455 bits (235), Expect = e-132
 Identities = 244/247 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgagactctgtaaaataaaagtggctgtgcttacagctcagagggagagggcctgcct 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 447 agtgagactctgtaaaataaaagtggctgtgcttatagctcagagggagagggcctgcct 388

                                                                       
Query: 61  gtggatgagcccctggattgaatccccaacaccacacccaaagtgtagcgaagggaagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gtggatgagcccctggattgaatccccaacaccacacccaaagtgtagcgaagggaagaa 328

                                                                       
Query: 121 ggtgtggacaagaaaccacccataaataaagaacagcaggactgtacagagtgaacagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ggtgtggacaagaaaccacccataaataaagaacagcaggactgtacagagtgaacagta 268

                                                                       
Query: 181 attcacgaatatccgttacaagaagcatgatggcgcgctttggataaggacaggggaaag 240
           ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 267 attcacgaatatccgttacaagaagcacgatggcgtgctttggataaggacaggggaaag 208

                  
Query: 241 gtcaagg 247
           |||||||
Sbjct: 207 gtcaagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)