BAC Information

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BAC

Clone NameMSMg01-369J20
Chromosome10 (Build37)
Map Location 109,484,404 - 109,686,622
singlet/doubletdoublet
Overlap geneLOC100042502, LOC100042506
Upstream geneNav3, LOC100042497
Downstream geneLOC100042510, LOC667855, 9230102K24Rik, LOC100042518, E2f7, Csrp2, Zdhhc17, EG432502, LOC667904, Osbpl8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369J20.T7 (MSMg01no369_j20.b1)MSMg01-369J20.TJ (MSMg01no369_j20.g1)
ACCAG476557AG476558
length738742
length of high quality
(start - end)		413 (44 - 456)399 (78 - 476)
definitionCHROMAT_FILE: MSMg01no369_j20.b1 PHD_FILE: MSMg01no369_j20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:23 2005CHROMAT_FILE: MSMg01no369_j20.g1 PHD_FILE: MSMg01no369_j20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,484,404 - 109,484,813)(109,686,312 - 109,686,622)
sequence
TTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTACTTTGCCACTTGATTAAAGTGCTCATGAAGTGTTTCCCAACTAAA
TTTGCCTTAAAACCTCTAAAACAAAATCGTTCACTTTAGTTCATTTTCGT
CCCCCTTTCAAACACAGGAGGGACTGGTACTAATTAAACAGTGGTGAGGG
TTCCATGAGCCTTAAAACAGGAATCATAAATGATGACTATAGCTGCGGTA
ACATGTACAATTGAGAAATGATGGGCAATATAACTTCATTCTAATGCATT
TCATTCCTTGGTACACAGATATAATAAGAAAGGAGATGAACACCTAGATG
GTGTATTGTTCCACATGAGAAAAGATTGTCTGTGCAGAGATGGTCACACT
GATAAAGGGAAGGCATCTAAACTGTTACTTTATTTTTGAAAACATTTATG
TACTTAAAGGCATTGGAGGAGATAGTGGTCTTCAGAGAGAAAAGATGGCT
TACGGTAATATTTGAACTTGTTTTCTTATAAATGAATATCTGTAATGCCT
ATTGGCTTCTTTTATTCCTAACGTCTCTCCTGTTTTGGTTATTCTTGCTT
CTTAGCTTTCCTTTTATTTTAGTCCCCTTATTATAAATTGTTCCCTTTTT
TTCTTTTTGTTCTGTTTTTTTTTTTTCATTGCTTTCTTTCTTTTCTTTCT
GGTTTTTTTCTTTCTAAACTCTTTTATCACTTTTTTCN

CGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTATGTACTCTAGATATTGATC
CTCTAACATATCGACACTTGGTGAGTACTTCTTTCCCATTTTACTAGTGG
TCTCTTTGCTGTGGTGATTGGCTTCTCTCTTGTGCAGAAGCTTTCCACTG
TAATTTGTCTGTTTTGCTCTTTATTTCCTGTGCTTTTTGGAACAATATAA
GAAATGATTGCCCCAATATCCTGAAGTATTTCCTTTATGTATTCTTTTAG
CTATCTAATAATTCCAGGTCTTGGAATTAGGTCTTCGGTTGAGGGTATTT
TTTGTGTTGATTATTAAATTTTTATTGATTTACATCATAGATTCTGAGTA
CTTTCATCTAATCATGTATATGATTATTGAACTATGGTTATAATATGCTG
TATTATGGTGTCTTTTCTGCTTGTCTTACCCTGTTCCAGGAAGTGCCTAT
CATCCATATGTTGATTATCATTTATCCTTGATTTCTGTCCCCACGGTCTC
TTATTGTAGTCTACTTGTGCATTTCCTTTTTTCCCTAATTCTTGTTTCTG
AAAACTTGCTCCTATTTGTCTTGAATTTTTCCCCCTTTGCTTTTTAGCCC
TTTCTGTTTTATTCTCCTCCTAATGCTGTTTTTGATTTCCTCTGTCCCTT
TTTATTCACGACCCCCGTTCTTTCTTCACTCCTCTCTTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_j20.b1 MSMg01no369_j20.b1 CHROMAT_FILE:
MSMg01no369_j20.b1 PHD_FILE: MSMg01no369_j20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:23 2005
         (413 letters)



>mm_chr10_109484201_109485013
          Length = 813

 Score =  723 bits (374), Expect = 0.0
 Identities = 401/410 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctactttgccacttgattaaagtgctcatgaagtgtttcccaactaaatttgcc 63
           ||||||||| ||||  ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 204 ggaattctagtttggaacttgattaaagtgctcatgaagtgtttcccaattaaatttgcc 263

                                                                       
Query: 64  ttaaaacctctaaaacaaaatcgttcactttagttcattttcgtccccctttcaaacaca 123
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 264 ttaaaacctctaaaacaaaatcgttcaatttagttcattttcgtccccctttcaaacaca 323

                                                                       
Query: 124 ggagggactggtactaattaaacagtggtgagggttccatgagccttaaaacaggaatca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggagggactggtactaattaaacagtggtgagggttccatgagccttaaaacaggaatca 383

                                                                       
Query: 184 taaatgatgactatagctgcggtaacatgtacaattgagaaatgatgggcaatataactt 243
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 384 taaatgatgactatagctgcggtaacatgtacaattgagaaatgacgggcaatataactt 443

                                                                       
Query: 244 cattctaatgcatttcattccttggtacacagatataataagaaaggagatgaacaccta 303
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gattctaatgcatttcattccttggtacacagatataataagaaaggagatgaacaccta 503

                                                                       
Query: 304 gatggtgtattgttccacatgagaaaagattgtctgtgcagagatggtcacactgataaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 504 gatggtgtattgttccacatgagaaaagattgtctgtgcagagatggtcacaccgagaaa 563

                                                             
Query: 364 gggaaggcatctaaactgttactttatttttgaaaacatttatgtactta 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gggaaggcatctaaactgttactttatttttgaaaacatttatgtactta 613


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space:   324816
Effective search space used:   324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no369_j20.g1 MSMg01no369_j20.g1 CHROMAT_FILE:
MSMg01no369_j20.g1 PHD_FILE: MSMg01no369_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:23 2005
         (399 letters)



>mm_chr10_109685824_109686622
          Length = 799

 Score =  586 bits (303), Expect = e-172
 Identities = 309/311 (99%)
 Strand = Plus / Minus

                                                                       
Query: 89  gattggcttctctcttgtgcagaagctttccactgtaatttgtctgttttgctctttatt 148
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 gattggcttctctcttgtgcagaagctttccactgtaatttgtctgttttgctctttatt 740

                                                                       
Query: 149 tcctgtgctttttggaacaatataagaaatgattgccccaatatcctgaagtatttcctt 208
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tcctgtgctttttggaacaatataagaaatgattgccccaatatcctgaagtatttcctt 680

                                                                       
Query: 209 tatgtattcttttagctatctaataattccaggtcttggaattaggtcttcggttgaggg 268
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tatgtattcttttagctatctaataattccaggtcttggaattaggtcttcggttgaggg 620

                                                                       
Query: 269 tattttttgtgttgattattaaatttttattgatttacatcatagattctgagtactttc 328
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tattttttgtgttgattattaaatttttattgatttacatcatagattctgagtactttc 560

                                                                       
Query: 329 atctaatcatgtatatgattattgaactatggttataatatgctgtattatggtgtcttt 388
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 559 atctaatcatgtagatgattattgaactatggttataatatgctgtattatggtgttttt 500

                      
Query: 389 tctgcttgtct 399
           |||||||||||
Sbjct: 499 tctgcttgtct 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space:   308100
Effective search space used:   308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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