BAC Information

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BAC

Clone NameMSMg01-369M01
Chromosome10 (Build37)
Map Location 39,799,890 - 39,800,050
singlet/doubletsinglet
Overlap geneSlc16a10
Upstream geneLama4, 1700025K23Rik, Tube1, EG624165, LOC100040964, Fyn, LOC629337, Traf3ip2, LOC667964, EG667970, E130307A14Rik, Rev3l, EG666304, LOC213332, 4930547M16Rik, LOC667982, 2010001E11Rik, LOC667994, LOC100041085, BC021785, AI317395, EG666342
Downstream geneBxdc1, 2410016F19Rik, Amd1, Amd2, LOC668051, Cdc2l6, LOC666374, Slc22a16, Ddo, 9030224M15Rik, Cdc40, Wasf1, Gpr6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369M01.T7 (MSMg01no369_m01.b1)MSMg01-369M01.TJ (MSMg01no369_m01.g1)
ACCAG476662AG476663
length807794
length of high quality
(start - end)
162 (61 - 222)244 (70 - 313)
definitionCHROMAT_FILE: MSMg01no369_m01.b1 PHD_FILE: MSMg01no369_m01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:34 2005CHROMAT_FILE: MSMg01no369_m01.g1 PHD_FILE: MSMg01no369_m01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
AGTTCTTGCTTTAAGAAAATAATAAAAAAAATAAAAATTTAAAAAATATT
AAAACATTTTAATATCATGACAAAATGAGGTGGTTAAATATTCTTGAAAA
CTTAATGTCATAAATTACATCTATTATAAGAAAAAATGCAGGCCTCCATA
GACACTAATGACAGGACACGCTGTGATGTTCATAGCTCTTGTCCTCAGTT
CTCTTTGTGGCTCTGAGAATTTCAGTTAGAAGAACACTGGTGTACTCTGC
CACACTGTGCTGTTATCTTTTTCCATTATCATGGATAAGCCCTAATATCT
TTTTCCTTCTGTCTCTTATCCTGCCTTTCCCCCATGCTTACCCTCGTGTT
CTTTACCTTATATTCTACGATGTTTTCCTTTGTTTGTCTTCCTTTTCCTA
ATTCTTTCTGTTTTATCATCCTTCACTTTTCTACTTAATCCTCTCTTTTT
TTTTTTATTCTTTCGTCTATCATTTTCTCGTCCCTCCTTTTTACATTCTT
TTTTTCTCCTCCTTTCCCATCCTTACTCTTTTTCTCTTCCTTCCTCTTTT
TCTTTCACCCCCTTCTTTCCTCCTTCTTTCCTCTTTACTTCCCCTTCTCT
ATTTTTTTTTATTCCTCTTTTCCTTTCTTTTACCTTTTTTTTTCTCCATT
TATTCTTTTTCTTCTTTTTTTTCTCTCCCCTTCTTTTCACTTTTTCCCCC
TTTTTCTCTTCCCTATTTATTCCCTTTTTTTTCCACACTTATTTTCCTTT
CTCTCAT
CTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTGATCTTTCCAGAACTTTTATCATGAATGG
GTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGATCATGT
GGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGGATTTT
CATATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTGGGTCAGG
ATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTAT
TGAGGATTTTTGCATTTTTATTCATAAGAGAAATTGGTCTGAAGTTCTCT
ATCTTTGTTGTATCTTTCTGTGGTTTAGGCATCATAGTAATATTGTTTTT
TCTTAATGACCTGGTCATAGTATCTTTCTACTTCTATCTCGTGTAAAAGT
TTGTCGTTTATCCGGTAATTTTATCTTCTTCTCAACGTCTGTATCTAATC
CAGTTTCTTTCCTTCATTTGTCTTTTGTTCTTTTTTTTGCTCTGCCTAAA
CTCATTTATTTTTTCGCTATATTTTCTTTTACCTCCCCCTTCTTCTCTGT
TCTTCAATTCTTTCCTTTCCACCCTTGTTTTTTTCAGCTCTCTAAATTTT
TTACCTCCCCCCTCTTATATCCTCCTCTTTTTCCTCCCTCTTTTTTATTA
ACTCTCCCTCTTACTTTTTTTTTCCTCTTTTACTTTTATCCCTTATTTTC
CTTTCCTCTTTTCTTCTTCTTCCCTCTTCTTTTTTCCGCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_m01.b1 MSMg01no369_m01.b1 CHROMAT_FILE:
MSMg01no369_m01.b1 PHD_FILE: MSMg01no369_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:34 2005
         (162 letters)



>mm_chr10_39799635_39800196
          Length = 562

 Score =  267 bits (138), Expect = 3e-76
 Identities = 156/162 (96%), Gaps = 1/162 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaagaaaataataaaaaaaataaaaatttaaaaaatattaaaacattttaatatcatga 60
           |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 416 ttaagaaaataataaaaataataaaaattt-aaaaatattaaaacattttaatatcatga 358

                                                                       
Query: 61  caaaatgaggtggttaaatattcttgaaaacttaatgtcataaattacatctattataag 120
           |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 357 caaaatgaggtggttaaatattcttgaaaacttaatgtcataaactacatctattagaag 298

                                                     
Query: 121 aaaaaatgcaggcctccatagacactaatgacaggacacgct 162
           |||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 297 aaaagatgcaggcctccaaagacactaatgacaggacacgct 256


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 162
Length of database: 562
Length adjustment: 8
Effective length of query: 154
Effective length of database: 554
Effective search space:    85316
Effective search space used:    85316
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)