BAC Information

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BAC

Clone NameMSMg01-369N17
Chromosome10 (Build37)
Map Location 67,637,223 - 67,637,602
singlet/doubletsinglet
Overlap geneArid5b
Upstream geneJmjd1c, Nrbf2, Egr2, Gm237, LOC100040081, LOC100039618, Zfp365, Plekhk1
Downstream geneLOC100040136, 1700040L02Rik, EG665342, Tmem26
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369N17.T7 (MSMg01no369_n17.b1)MSMg01-369N17.TJ (MSMg01no369_n17.g1)
ACCAG476742AG476743
length773745
length of high quality
(start - end)
250 (108 - 357)381 (74 - 454)
definitionCHROMAT_FILE: MSMg01no369_n17.b1 PHD_FILE: MSMg01no369_n17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:42 2005CHROMAT_FILE: MSMg01no369_n17.g1 PHD_FILE: MSMg01no369_n17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACGACTCCTATATCGAGAGGATCCGCGGAATTAAAGCACTTACCTAAAAA
GGAAGGCCATGGAGGAACGCTGCTCAGTAGCTGGCCTATCATGGCTTGGC
TAGTCTGTCTACTTATACAACCCAATATACCAGTCCAGAGGTAGTAGCAT
CCACAGTGAGCTAGGCCCACCCACATCAATCTGCAACCAAGAAAATGCAT
CATGGACTTAGAAGCACCTTCTTAGTTGAGACTCTTCCCAAATGACCCAG
CTTGTGTTGAGTTGACATAAAACTAACCAGCTGTCTTAGGGTTTTATCAC
TGTGAAGATACAACCACAGCAACTCTTATAAAGAAGAAACATTTAACTTG
GGTTGGCTTACAGTTTTAGAACGTTAATTCATTATCATGATGGCAGGAAG
CATGGTAGGGCGCACGCAGACATGGTGCTGGAGGAGCTGATAATATACCG
CTTGACCCATGGGCCGCACGAGACTGGGGCCCCCTGGGGCTTAAGCTTGA
CATAGGATACCCCCCAAACCCCCCCCCTCGGGGGAACACTTCCTCCCATC
ACGGGCGCCATCTACTTCTCTGAGGGCCCTATCCCTCTAACCCCGCCTTC
TCCCTTCCTCGCCCCCCTCCCTTACCCTGCTGCTTCCTCCTTGTGCGTCC
CCTCCTTTCTTTCCCCCCCCCTTTCTTCTTTCGCCCTCTCTCCCTCCTTT
TCGCCCGCTTCTATCCCTTTCTTTCCCCTTGGCCCGTCTCTCCCCCCCTC
TTTTCCCCACCCCTCTTCTCTCG
ATGCAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTCCACCAGGAGCTTAAGTTGAAAGA
GGGAGGTCCATAAATACTTGACTTATCTAAGAAAGGAGATAAGAATGAAT
GGAGGTCTGAAACCATCTGGAATCCAGTAGTGATTTCTCTATCATTTCAA
CAAACATGTTGTTCCAAACACAGTAGACTTGATTCTAACTCTTTGGAGGA
CCTTAGAATCCAACGGGGGAAAAAGACACGTAAGCCTGATAATTTTAACA
AGCCAAACGTTTAATGTTTAGTGGGTGGCCCAAGGAGATGGTTTTTGACA
TGGGTAAAGCCATGCACTACCACACTCAGTTCCACATGGTCCCAGAACCT
ACATGGTACAAGGAGAAAGGGCTTCTTGATAGTTGTCCTCTGACCGCGCA
CTTGGGTAGGGGCATGTGTACGCCTTTCCACAAGTCAATATGTAGTGTTT
TTATTTTTAACAAAGAGTTGAGTGGGTTCTCAAGCGCTTGTTTGATTCCC
AGGACTCCAGGAAAAATGTTAAGGGTTAAGGTGGCGTTCTTTACTATTTC
TCTGGTGGCGGTTTTTTTTTTTGCTTATTTTTCCACCCTTTTTTTTTCCA
TTTTTTTTTTTTTTTTTCTTCTCATACGTGTATCCCATCTCATTTTCTTT
TATATCTATTTATCTTCTTTCTATAATCTACCTCCTCCTGCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_n17.g1 MSMg01no369_n17.g1 CHROMAT_FILE:
MSMg01no369_n17.g1 PHD_FILE: MSMg01no369_n17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:42 2005
         (381 letters)



>mm_chr10_67637023_67637802
          Length = 780

 Score =  714 bits (369), Expect = 0.0
 Identities = 378/383 (98%), Gaps = 5/383 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtccaccaggagcttaagttgaaagagggaggtccataaatacttgacttatctaagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtccaccaggagcttaagttgaaagagggaggtccataaatacttgacttatctaagaa 260

                                                                       
Query: 61  aggagataagaatgaatggaggtctgaaaccatctggaatccagtagtgatttctctatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggagataagaatgaatggaggtctgaaaccatctggaatccagtagtgatttctctatc 320

                                                                       
Query: 121 atttcaacaaacatgttgttccaaacacagtagacttgattctaactctttggaggacct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttcaacaaacatgttgttccaaacacagtagacttgattctaactctttggaggacct 380

                                                                       
Query: 181 tagaatccaacgggggaaaaagacacgtaagcctgataattttaacaagccaaacgttta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagaatccaacgggggaaaaagacacgtaagcctgataattttaacaagccaaacgttta 440

                                                                       
Query: 241 atgttt--agtgggtggcccaaggagatggtttttgacatgggtaaagccatgcactacc 298
           |||     ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atg---ggagtgggtggcccaaggagatggtttttgacatgggtaaagccatgcactacc 497

                                                                       
Query: 299 acactcagttccacatggtcccagaacctacatggtacaaggagaaagggcttcttgata 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 acactcagttccacatggtcccagaacctacatggtacaaggagaaagggcttcttgata 557

                                  
Query: 359 gttgtcctctgaccgcgcacttg 381
           |||||||||||||||||||||||
Sbjct: 558 gttgtcctctgaccgcgcacttg 580


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 780
Length adjustment: 9
Effective length of query: 372
Effective length of database: 771
Effective search space:   286812
Effective search space used:   286812
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)