BAC Information

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BAC

Clone NameMSMg01-370B13
Chromosome10 (Build37)
Map Location 26,010,872 - 26,011,362
singlet/doubletsinglet
Overlap geneL3mbtl3
Upstream geneAkap7, Epb4.1l2, 2010003K15Rik, EG667513, LOC667519, LOC628697, C030003D03Rik, LOC100040851, LOC15352, Samd3
Downstream geneLOC435208, LOC667572, LOC100040349, Arhgap18, Lama2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370B13.T7 (MSMg01no370_b13.b1)MSMg01-370B13.TJ (MSMg01no370_b13.g1)
ACCAG476924AG476925
length767764
length of high quality
(start - end)		495 (38 - 532)387 (69 - 455)
definitionCHROMAT_FILE: MSMg01no370_b13.b1 PHD_FILE: MSMg01no370_b13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:01 2005CHROMAT_FILE: MSMg01no370_b13.g1 PHD_FILE: MSMg01no370_b13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAT
CTCTTTCTCATCCCTTACATATTAAAACTAGGATGTTGGTCAGAGCTAGT
GCAGAATGGGATAACCAAGAAGATGCAACCAAAGCAAAGAGGCTTTTGAA
CAATCTACAACTCTTTGCTGAATAGTTTTATGACACAAGTAAGAGGTATT
TGGGGAGAGGGAACCTCAGCTGAGAAAATGGCCCCCACATCTGATTGACC
TGTGGGCAAACTCACAGCACATTTTTTGGATTGACAGCTCAGATCACTGT
GGCTCGTGACAACTCTGAGCTGGTAGTCTTGTGAGGTATAAGAAAGCCAG
CTGAGCAAGCTACAAGGAGCAAGCTAGTAAGTATCTATCCTTCTGCAATG
ACCTCTGGCTCCGTTCCTGACTGTGTAGGTTCTAGCCTTGTTTGAGTTCC
TGCCGTGAATTCCCTCGGGGATGTACTATGGGGTGGAATTGAAAACTGAA
ATAAACATTTTTGCCCCCAAGTTGATTTTGGTCTATAGNCTTTAATCACA
GCAATAGAAACGCCCATTATGACAAAGTCCGAAGTTTTAAGAACAAGGTT
TCAGGGCTCCGAGAAGGTTACATTCCGGCTATCCCACAAAAGTGATTCTG
TCCCCCTAAATTTTGGACAATCCCTCCTGTAAGAAAATCCCGTGGGCGGC
ATAGCTGTTACTACTAATCTCCTGCCCTTCTCCCCCATTTCCCTTTGCCT
TTTCCCTATTATCACGN

AGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACAGTAGCTATGGGCTGCCCGCACAAGATCAA
TCAAGTAAGATTCCAAGGACTGGAAGGAGCTGGTGAGCTTGCTCCTCTAA
ACTATGGAGCCATTAACCATTAATGGCTGCTGGAGGGGGAGAGTCAGTTT
TCTTCAGAGGTATGGCCCTACTTAGGCTGAGCACTCTTCTGTTGCTGTAT
CCATACCCATACACATTATTTGGGTTGCACTAATTTTGGTCTCAGTTGAA
TATTTCAAAATACAGAGAGCCGGAGGAGAAGAAAGAGGACATTAAATTAG
GTAGCAGTTAGAAGGAAATCTCAAATTATTGTAGAGAGGTATAAGAGTAA
ATATAATCAAAAAGCATTATATACATATATGAAATTATAAATTAATAAAT
AATTAAAATACCTGAATATAAAATAGGCCGAAATAAAGGCCTCTATAAAC
AACACTACTTTCTAAAAATCCTGGGGCCAATGTGATGGCCCATGCCCTTG
ACACACAACAGACTCTCTATGAATTTTAGCTCCGGGGGTTCTTTTTTTTT
TTTATACCCCTTGCTCTCCTTAAATTCCTAAAAATCTTCCCCGTCTACCC
TTTTATATTTATCCTTCTCCCCTATATTCTCCTTTATTTCTCGCTTCCTC
CCCATTCCTCCCCCCCTCGCCAACTATTTTTTCATTCTTTCTTGCGCCCA
CACTCTTTCCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_b13.b1 MSMg01no370_b13.b1 CHROMAT_FILE:
MSMg01no370_b13.b1 PHD_FILE: MSMg01no370_b13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:01 2005
         (495 letters)



>mm_chr10_26010668_26011562
          Length = 895

 Score =  949 bits (491), Expect = 0.0
 Identities = 491/491 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctatctctttctcatcccttacatattaaaactaggatgttggtcagagctagtg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctatctctttctcatcccttacatattaaaactaggatgttggtcagagctagtg 264

                                                                       
Query: 65  cagaatgggataaccaagaagatgcaaccaaagcaaagaggcttttgaacaatctacaac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cagaatgggataaccaagaagatgcaaccaaagcaaagaggcttttgaacaatctacaac 324

                                                                       
Query: 125 tctttgctgaatagttttatgacacaagtaagaggtatttggggagagggaacctcagct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctttgctgaatagttttatgacacaagtaagaggtatttggggagagggaacctcagct 384

                                                                       
Query: 185 gagaaaatggcccccacatctgattgacctgtgggcaaactcacagcacattttttggat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gagaaaatggcccccacatctgattgacctgtgggcaaactcacagcacattttttggat 444

                                                                       
Query: 245 tgacagctcagatcactgtggctcgtgacaactctgagctggtagtcttgtgaggtataa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgacagctcagatcactgtggctcgtgacaactctgagctggtagtcttgtgaggtataa 504

                                                                       
Query: 305 gaaagccagctgagcaagctacaaggagcaagctagtaagtatctatccttctgcaatga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gaaagccagctgagcaagctacaaggagcaagctagtaagtatctatccttctgcaatga 564

                                                                       
Query: 365 cctctggctccgttcctgactgtgtaggttctagccttgtttgagttcctgccgtgaatt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cctctggctccgttcctgactgtgtaggttctagccttgtttgagttcctgccgtgaatt 624

                                                                       
Query: 425 ccctcggggatgtactatggggtggaattgaaaactgaaataaacatttttgcccccaag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccctcggggatgtactatggggtggaattgaaaactgaaataaacatttttgcccccaag 684

                      
Query: 485 ttgattttggt 495
           |||||||||||
Sbjct: 685 ttgattttggt 695


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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