BAC Information

Click to search

BAC

Clone NameMSMg01-370D20
Chromosome10 (Build37)
Map Location 29,629,930 - 29,774,641
singlet/doubletdoublet
Overlap geneLOC674389, Gm232
Upstream gene4930519F09Rik, 2310057J18Rik, LOC432447, 6330407J23Rik, Echdc1, Rnf146, Rspo3, EG630389, Rpl12, LOC623064
Downstream geneLOC667696, LOC100040542, 2610036L11Rik, LOC212815, Trmt11, Hint3, Ncoa7, LOC382354, Hey2
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370D20.T7 (MSMg01no370_d20.b1)MSMg01-370D20.TJ (MSMg01no370_d20.g1)
ACCAG477034AG477035
length792804
length of high quality
(start - end)		429 (35 - 463)410 (66 - 475)
definitionCHROMAT_FILE: MSMg01no370_d20.b1 PHD_FILE: MSMg01no370_d20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:13 2005CHROMAT_FILE: MSMg01no370_d20.g1 PHD_FILE: MSMg01no370_d20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,774,217 - 29,774,641)(29,629,930 - 29,630,339)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACCTTA
TATTTAAATGAGTTAGACATGTTGAATTAGGATTATATAGAAAAATGTTA
AGTTTACATTTCATGAAGAAAATGTCTTAGGTCAAACAATAGTCTCCTAA
CTACTTCAATCTGTTTCTGAATAACAATAATAATGTCATTTACAAATGTG
CCATTATTGCTTAAAATTTCATTATGTTTTATGTGATGATGGATTTAAAG
TATAAATACTACACTGGTGTTTAGAAAATGTGGTCTGCATTTTCATATTA
TTTTAACCATTATATATTGAATGTTTCTATATAGTTTTATAAACAGATAC
TGAATGCCTTCTTCACTCTTATAGGTCCTGTTTGACTTACAAATTATTTC
ACCTTTCTTTTTCTTGGGTTAGGCCCAGACCAAGCTCTGTATTATATATT
AGAAAAATGGGGATGGTTTTCCTTGTACCATGCTCCGTACACCTATGCCT
TTCTTCCGAAATTGCTTACTGTTTTATAATGTCTCCCTCTACTCAATTAT
CTTTTTCCTCTGTTTTCCCTCTCCTACTCCCTTCCATCTTCTTACCACCA
CTCTTACTTCTTCTATTCTCTCATTCCCCCCTGTTTTTTTTCCTTTTTTA
AATTCCTTAGTATTTGATTCCTAAATTATATACCTATTCTTTTTTCCTCT
CCCTATCTCTTCTCTTTCTTTCCTCCTATCATACTTCTCCCTCTTTCTTT
CCCTTTCTTTTTCCCTATATTCTCTCTCCTTTTCTTCCCCCC

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCTTTAGATGCAACAGTTCTCCTGAAGCAGGTGAGC
AAAGTGTAGTACCTAATCCATTTGAACTAGCTTACAACGCACACTGGTAG
TTATTGTTTAGACAGTGGATTTCACATAAAAATAAAACAAAAGAAATTGA
ATAAACCTAGAAACAATGAATATAGTGCACACATGAGCACAAAGACAAGA
AAAGCCCTGAGCTTGTGAAAATTTCAGTGTTTTTCCCTTTTTGTACACTT
TGTTGTAGAACACTTTATCACAGCTGCATGAGCTTGCAGTGAAGAGTTCA
GAAGAATGAAGGCAATGAAAATCATATTCCATCATCTGGTCTTTCACTTT
AAGATTCAGAAATACATCATTGCCAGTATTAGGAGATGATCGGACCTGGA
GAACTCAGCTCATGTTCATTTTAATATACATAAAGTTGAAGTGCGGATCA
AACTGCCTATTTATCCTTTCCCCAAAGAAATATACTGGCAGCTCTGATTA
TCTGGACAAAGTCCGGAGATGTCCACCCTTCGGGTAACCCAATTGACTCG
CCTTTTCCTTCATTTATTCATAACCTTCCCTACTTTCTTTTCTCCCTCTT
CTCCTTTTTTTTCTCGCTCCCCAACCACTCTTCGGCTTTTTCTTTCCCTC
TTTATCCCTCTTTCCCCCTCCTTTACCATCTTTTTTCCCTTTCTTCCCCC
TTATCCTTTCTCACTTCTTTCCCGTTCTTTTATTTTATCACCCTCTTCCA
TTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_d20.b1 MSMg01no370_d20.b1 CHROMAT_FILE:
MSMg01no370_d20.b1 PHD_FILE: MSMg01no370_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:13 2005
         (429 letters)



>mm_chr10_29774013_29774841
          Length = 829

 Score =  822 bits (425), Expect = 0.0
 Identities = 425/425 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaccttatatttaaatgagttagacatgttgaattaggattatatagaaaaatgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 gaattcaccttatatttaaatgagttagacatgttgaattaggattatatagaaaaatgt 570

                                                                       
Query: 65  taagtttacatttcatgaagaaaatgtcttaggtcaaacaatagtctcctaactacttca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 taagtttacatttcatgaagaaaatgtcttaggtcaaacaatagtctcctaactacttca 510

                                                                       
Query: 125 atctgtttctgaataacaataataatgtcatttacaaatgtgccattattgcttaaaatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 atctgtttctgaataacaataataatgtcatttacaaatgtgccattattgcttaaaatt 450

                                                                       
Query: 185 tcattatgttttatgtgatgatggatttaaagtataaatactacactggtgtttagaaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tcattatgttttatgtgatgatggatttaaagtataaatactacactggtgtttagaaaa 390

                                                                       
Query: 245 tgtggtctgcattttcatattattttaaccattatatattgaatgtttctatatagtttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tgtggtctgcattttcatattattttaaccattatatattgaatgtttctatatagtttt 330

                                                                       
Query: 305 ataaacagatactgaatgccttcttcactcttataggtcctgtttgacttacaaattatt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ataaacagatactgaatgccttcttcactcttataggtcctgtttgacttacaaattatt 270

                                                                       
Query: 365 tcacctttctttttcttgggttaggcccagaccaagctctgtattatatattagaaaaat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tcacctttctttttcttgggttaggcccagaccaagctctgtattatatattagaaaaat 210

                
Query: 425 gggga 429
           |||||
Sbjct: 209 gggga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space:   344400
Effective search space used:   344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no370_d20.g1 MSMg01no370_d20.g1 CHROMAT_FILE:
MSMg01no370_d20.g1 PHD_FILE: MSMg01no370_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:13 2005
         (410 letters)



>mm_chr10_29629730_29630539
          Length = 810

 Score =  777 bits (402), Expect = 0.0
 Identities = 408/410 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttagatgcaacagttctcctgaagcaggtgagcaaagtgtagtacctaatccatttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttagatgcaacagttctcctgaagcaggtgagcaaagtgtagtacctaatccatttga 260

                                                                       
Query: 61  actagcttacaacgcacactggtagttattgtttagacagtggatttcacataaaaataa 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actagctcacaacgcacactggtagttattgtttagacagtggatttcacataaaaataa 320

                                                                       
Query: 121 aacaaaagaaattgaataaacctagaaacaatgaatatagtgcacacatgagcacaaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacaaaagaaattgaataaacctagaaacaatgaatatagtgcacacatgagcacaaaga 380

                                                                       
Query: 181 caagaaaagccctgagcttgtgaaaatttcagtgtttttccctttttgtacactttgttg 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caagaaaggccctgagcttgtgaaaatttcagtgtttttccctttttgtacactttgttg 440

                                                                       
Query: 241 tagaacactttatcacagctgcatgagcttgcagtgaagagttcagaagaatgaaggcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagaacactttatcacagctgcatgagcttgcagtgaagagttcagaagaatgaaggcaa 500

                                                                       
Query: 301 tgaaaatcatattccatcatctggtctttcactttaagattcagaaatacatcattgcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgaaaatcatattccatcatctggtctttcactttaagattcagaaatacatcattgcca 560

                                                             
Query: 361 gtattaggagatgatcggacctggagaactcagctcatgttcattttaat 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtattaggagatgatcggacctggagaactcagctcatgttcattttaat 610


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space:   321201
Effective search space used:   321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |