BAC Information

Click to search

BAC

Clone NameMSMg01-370N08
Chromosome10 (Build37)
Map Location 15,477,658 - 15,477,908
singlet/doubletsinglet
Overlap genenone
Upstream geneNmbr, LOC666917, LOC637043, LOC100039492
Downstream geneLOC671439, LOC382457
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370N08.T7 (MSMg01no370_n08.b1)MSMg01-370N08.TJ (MSMg01no370_n08.g1)
ACCAG477485AG477486
length782830
length of high quality
(start - end)
358 (42 - 399)252 (72 - 323)
definitionCHROMAT_FILE: MSMg01no370_n08.b1 PHD_FILE: MSMg01no370_n08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:00 2005CHROMAT_FILE: MSMg01no370_n08.g1 PHD_FILE: MSMg01no370_n08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTGTTCTGATCTGAGCCCCATTTTTTAACGGGGTTATTAGATTTTCTG
GACTCTACGCTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATC
TGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTA
TCTTATTGACGATGTCTTTTGCCTTGCAGAAGCTTTGCAACTTTATGAGG
TCCCATTTGTCAATTCTTGATCTTACAGCACAAGCCATTGCTGTTCTATT
CAGGAATATTTCCCCTGTACCCATATCTTTGAGGCTTTTCCCTACTTTCT
CCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGATCCAC
TTAGATTTGACCTTAGTATAAGGAGATAGGAATGGATCAATTCTCATTCT
TCTACATGACAACCACGAGTTTGTGTAGCTCCATTTGTTGAAAAAGCTGT
CTTCTCTTCTACCGGATGGTTTTATTTTCCCTTGTCCAATATCCTCTGAC
CACATTTGCGTGTGCTTCCTTTTTCTTTCTCCCCTTTTACCCTCTTCGCC
TCTCCCTATTCTGACTTTTTTTTCCCCTTTTTCATCTTTTTTCTCCCTTT
TTTCCCCGTTTTTTCCCTTTTTTTCTATCCACCTTCCTTTCCTTTCTCTA
ATTTTTCCCCTTTTCCTTTTTCCACCTTTTTTTTTTTCTCTTTCTTTATC
CTCCTTTCTCTTTCCCCCCTCTCTCCCTTCTN
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAAGAAGATGGCAAGTCTACTTTCATTGT
GTTGAACTCAGTGACTGAAATTCAAAAGGGGGATTAAGAGTAGGAAAGGG
AGGGCCTGGATTAAAACAACAGGAACTCAAATGTTAAATAAATTTAAGGT
TTGCAGGGAAATGTAGAAATGATTTTTTTGTGTGTGTGGAAAAAGTGAGT
TTTGTGGAAGCAATCAGTGAAAGATGATTGTTCTAAGTAAAATGCATATA
CTAGACTTGACTTCATATACTATAGCAAGAATATAACTCTAATAGGGGAG
ACATAAACAAAGATTTGCTATCATGAGAAAACTTACAAATAATGAATATG
ATAAGCCTTTGCCAAGTAACGGCATTTCTATTTTCGTATATCCACTGATT
CCCTTCATTGTCCTTCATCCCGCCATTTCTTGTAAATGACGCCCCGAATT
TCTCCACCCCCCGCTTAGTCATCATTACTCCTCATATCCTTTTTCTCCCC
TCCTGCTCTACTCCCACATTTTTTTTCGGTTCTTTTTCTTTCTCTCCCTT
TTTTCCGTACCTCTTTTCTCTTTTCCTATCTCCCGCTCTCTTATCTTCCC
CTTACCTCCTTATTATTTTCCCCCTCCCCCATTTATTTTCCGCTCTTTTT
ACTTCTCTCCACTATTCTCCCCCTTTCCCCCTCTCCTATTCCATCTTTGT
TTTCCCTTTCTCTTCCCTATTTTCCTACTCTATTTTGCGTTCCTCCTTTC
TATCATACTTTTATCATCTTTCCCTCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_n08.g1 MSMg01no370_n08.g1 CHROMAT_FILE:
MSMg01no370_n08.g1 PHD_FILE: MSMg01no370_n08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:00 2005
         (252 letters)



>mm_chr10_15477458_15478109
          Length = 652

 Score =  485 bits (251), Expect = e-142
 Identities = 251/251 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagaagatggcaagtctactttcattgtgttgaactcagtgactgaaattcaaaagggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagaagatggcaagtctactttcattgtgttgaactcagtgactgaaattcaaaagggg 260

                                                                       
Query: 61  gattaagagtaggaaagggagggcctggattaaaacaacaggaactcaaatgttaaataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gattaagagtaggaaagggagggcctggattaaaacaacaggaactcaaatgttaaataa 320

                                                                       
Query: 121 atttaaggtttgcagggaaatgtagaaatgatttttttgtgtgtgtggaaaaagtgagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttaaggtttgcagggaaatgtagaaatgatttttttgtgtgtgtggaaaaagtgagtt 380

                                                                       
Query: 181 ttgtggaagcaatcagtgaaagatgattgttctaagtaaaatgcatatactagacttgac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgtggaagcaatcagtgaaagatgattgttctaagtaaaatgcatatactagacttgac 440

                      
Query: 241 ttcatatacta 251
           |||||||||||
Sbjct: 441 ttcatatacta 451


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space:   156249
Effective search space used:   156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)