BAC Information

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BAC

Clone NameMSMg01-371I23
Chromosome10 (Build37)
Map Location 117,069,419 - 117,227,943
singlet/doubletdoublet
Overlap geneCpm, Mdm2, Slc35e3, Nup107
Upstream geneLOC668080, EG668091, Gm239, Rab3ip, D630029K05Rik, LOC544741, Best3, Lrrc10, Cct2, Frs2, Yeats4, 9530003J23Rik, Lyzs, Lyz, Cpsf6, LOC668146, LOC668149, Kifc5c
Downstream geneRap1b, Mdm1, Il22, LOC672934, LOC668180, LOC668186, LOC668187, LOC668191, EG668193, Iltifb, LOC668198, EG668203, EG668205, EG668209, EG668213, LOC668216, Ifng, LOC100043478
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371I23.T7 (MSMg01no371_i23.b1)MSMg01-371I23.TJ (MSMg01no371_i23.g1)
ACCAG478036AG478037
length783750
length of high quality
(start - end)		466 (78 - 543)440 (51 - 490)
definitionCHROMAT_FILE: MSMg01no371_i23.b1 PHD_FILE: MSMg01no371_i23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:03 2005CHROMAT_FILE: MSMg01no371_i23.g1 PHD_FILE: MSMg01no371_i23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,227,478 - 117,227,943)(117,069,419 - 117,069,854)
sequence
NNNCCCATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGTAGTCAAGCAGCTCTTTGGTC
TGCTGGAGGAAAAGATTTACCTTTATGAAGCCATACTGTAGTATAGATTT
CGGGTCCTAAGATGCCTCTGCGGGGAACATACTATTGTGATACTAGGCAG
TCAAAGACAGGGCTGGTAGCCGAGCACTGGGTGGGATTTGGGGGAGTAAG
CAGGACTCAGAGACAAGAGGTTATTCTTGCCAACAAGATCCAAGACTTGG
CTATTGGGGTGAGCCGTCCCACGACTGACGAAGATCCTTTCTTTGCCCTA
ACTGTAACGGTAGTCCTTCAAAGATGCCGTCTAAGACCTTGATTATACTG
TTCTAGGAGTGGCTTCGGGGGGATGTCATCCCCTGTGATCCGGGATGCGG
AGGTGACGAGGACTGCCCGGAAGCACAGTGCTCACAAAAGAGTTCTAAGT
ATCCTTCGTGTCAGGATTGCAGAATGCAGGGTGCCGTGAATCAGGGCTGT
GGGATTAAACATTAGCTGGGAAAGAATTTGGGTTACCTCCTTTTGGGTGT
ACATATTGGGTTAGTTACTCGGGGACTACCTGTTCGTCTGGGGATGTTCT
TGTGGTCTTGATGNCCTGTTTNTGTTTGNAGATTGTGGTNCTGTCNNCTT
TTGTGNTGNCGNNAAGTGTGNNNTTTAGNTNNNATTTTATNNNNNNTGTT
NTGNATCNTTGTGTNTGNTTGTNTGCTGNNTTG

TTTTAATCTCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTTTCTTGGTTTTACACTCTGATTATGTGTGTTTTGTTAGTCA
TTCCCCATGTTGGGTCGTTGGAATACTTTCTGATTCTGTTATAAATGATG
ATATAAATCCTTCGATACATATCTTACATACATGCATTAGTATACATGCA
TGCTTTGTCTACAGAATCCAAAGAGGGCATCATATCTCCCTGGAACTGAG
GTTCCAACAATAGCAGCTTCCGCATGGGTGCTGGGAACTTGATGTGGGTC
CTCTAGAGAAGCAGCCAGTGCTCTTAACCAGTGAGCTGTCTTTCCAGCCC
TGAACTTTTACTTAAAAAAAAAATTGAAACCTACACATTTGAGCACAAAT
TTACTTTTAACCTAGATTTAGACATAGTAGATGAGCCATATTTGACTCTA
GGTTTTGAAGGCATCCTTAAAACTTGTTGACATGGTGTAGAAAAATCTTA
AGTGAAAAACGAGAAAAGCAGTACCAAGTGGACCAGGGCAAAATATTCAC
TGTCAGTGNNGTGTGTGTATGTGTGTGTGTGTGTGNGNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTNNTTTTTTTTTTTTTTNNTTTTT
TTTTTTTTTTTTTNTTTTTTTTTTTTTTTTNNTTTTNTTTTTTTNNNTTN
TTTTNTTTTTTTNTTTTTTTTTTNTTTTTTTNTTTTTTTNTNNTTTGGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_i23.b1 MSMg01no371_i23.b1 CHROMAT_FILE:
MSMg01no371_i23.b1 PHD_FILE: MSMg01no371_i23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:03 2005
         (466 letters)



>mm_chr10_117227278_117228143
          Length = 866

 Score =  832 bits (430), Expect = 0.0
 Identities = 457/466 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtagtcaagcagctctttggtctgctggaggaaaagatttacctttatgaagccatact 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 666 tgtagtcaagcagctctttggtctgatggaggaaaagatttacctttatgaagccatact 607

                                                                       
Query: 61  gtagtatagatttcgggtcctaagatgcctctgcggggaacatactattgtgatactagg 120
           |||||||| ||||||||| |||||||  ||| |||| |||||||||||||||||||||||
Sbjct: 606 gtagtataaatttcgggttctaagataactccgcggagaacatactattgtgatactagg 547

                                                                       
Query: 121 cagtcaaagacagggctggtagccgagcactgggtgggatttgggggagtaagcaggact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 cagtcaaagacagggctggtagccgagcactgggtgggatttgggggagtaagcaggact 487

                                                                       
Query: 181 cagagacaagaggttattcttgccaacaagatccaagacttggctattggggtgagccgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cagagacaagaggttattcttgccaacaagatccaagacttggctattggggtgagccgt 427

                                                                       
Query: 241 cccacgactgacgaagatcctttctttgccctaactgtaacggtagtccttcaaagatgc 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ccctcgactgacgaagatcctttctttgccctaactgtaacggtagtccttcaaagatgc 367

                                                                       
Query: 301 cgtctaagaccttgattatactgttctaggagtggcttcggggggatgtcatcccctgtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 cgtctaagaccttgattatactgttctaggagtggcttcggggggatgtcatcccctgtg 307

                                                                       
Query: 361 atccgggatgcggaggtgacgaggactgcccggaagcacagtgctcacaaaagagttcta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 atccgggatgcggaggtgacgaggactgcccggaagcacagtgctcacaaaagagttcta 247

                                                         
Query: 421 agtatccttcgtgtcaggattgcagaatgcagggtgccgtgaatca 466
           |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 246 agtatccttcgtgtcaggattgcagagtgcagggtgccgtgaatca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no371_i23.g1 MSMg01no371_i23.g1 CHROMAT_FILE:
MSMg01no371_i23.g1 PHD_FILE: MSMg01no371_i23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:03 2005
         (440 letters)



>mm_chr10_117069215_117070054
          Length = 840

 Score =  797 bits (412), Expect = 0.0
 Identities = 430/436 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattttcttggttttacactctgattatgtgtgttttgttagtcattccccatgttggg 64
           ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcttggttttagactctgattatgtgtgttttgttagtcattccccatgttggg 264

                                                                       
Query: 65  tcgttggaatactttctgattctgttataaatgatgatataaatccttcgatacatatct 124
            ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 265 acgttggaatactttctgattctgttataaatgatgatataaatccatcgatacatatct 324

                                                                       
Query: 125 tacatacatgcattagtatacatgcatgctttgtctacagaatccaaagagggcatcata 184
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tacatacatgcattagtgtacatgcatgctttgtctacagaatccaaagagggcatcata 384

                                                                       
Query: 185 tctccctggaactgaggttccaacaatagcagcttccgcatgggtgctgggaacttgatg 244
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 385 tctccctggaactgaggttccaacaatagcagcttccgcgtgggtgctgggaacttgatg 444

                                                                       
Query: 245 tgggtcctctagagaagcagccagtgctcttaaccagtgagctgtctttccagccctgaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgggtcctctagagaagcagccagtgctcttaaccagtgagctgtctttccagccctgaa 504

                                                                       
Query: 305 cttttacttaaaaaaaaaattgaaacctacacatttgagcacaaatttacttttaaccta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cttttacttaaaaaaaaaattgaaacctacacatttgagcacaaatttacttttaaccta 564

                                                                       
Query: 365 gatttagacatagtagatgagccatatttgactctaggttttgaaggcatccttaaaact 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gatttagacatagtagatgagccatatttgactctaggttttgaaggcatccttaaaact 624

                           
Query: 425 tgttgacatggtgtag 440
           ||||||||||||||||
Sbjct: 625 tgttgacatggtgtag 640


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space:   358161
Effective search space used:   358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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