BAC Information

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BAC

Clone NameMSMg01-371L17
Chromosome10 (Build37)
Map Location 92,108,816 - 92,109,225
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041799, LOC667203, LOC216229, LOC100041814
Downstream geneNedd1, Gm872, 4930485B16Rik, EG667314, Pctk2, Elk3, LOC100041854, Lta4h, Hal, Amdhd1, Ccdc38, Snrpf, LOC100041873, Ntn4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371L17.T7 (MSMg01no371_l17.b1)MSMg01-371L17.TJ (MSMg01no371_l17.g1)
ACCAG478166AG478167
length782795
length of high quality
(start - end)		410 (79 - 488)323 (46 - 368)
definitionCHROMAT_FILE: MSMg01no371_l17.b1 PHD_FILE: MSMg01no371_l17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:17 2005CHROMAT_FILE: MSMg01no371_l17.g1 PHD_FILE: MSMg01no371_l17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAATCTCAGGACTGGTTCTGA
GCTTGGAACTTCATTCATTTAAGCAGGAGAAATGTTGCTCAAATTAACAT
GAACCGGTCAGCAGAGTCATTTCATTACTGAGGTCAGACTCCAGACTGTT
GCTTGAGTGAGTTTAGCTGTTGGGAGACCAGGGGGTCTGCCTCATAAAAA
GACCTGTTTTGTTGGAAGCTTCTTCACGAAGTGCATGGCTTGGAATATGT
TAAGCTCTTCTTTAGTGAACAAAGTCATAAAAATATGTGAGCACACAGAC
AAGGATTCATGTCTGGGATCTCATGGGGCTCACTGTCTTTCCAAGACTGG
TTTGCTTGTCTTTCCTTTCCTTTCCTTTTTTTTTTCATTTAAGATGCCAG
CAAAAAGCCGTGGTATTTTATTTTTGTCTCTGGTAAATTGCTCTAGAAAC
TTAAACAAATTAAATATCCTGTTCTTGTGTTGCTGAGACTCCCTGGGAGA
AAATCCATCTCTGGAAGTCTGAGGGCTTGGGAAAAAAAACCCACCTCATA
AGATAACATTTTTAACCACTTCTGTGAAACCCCTCCCGAATGGTCTTTCT
TAAAGAAAAGTTCGTGTGCTTTCCAACCTCCTGCCCATGTCTTTACATTG
TCCTGTTCTCTTCCATACCATCTTCCTCACTGTTCTTTCTTCTTGCCCTC
CCTCCTTCCTCCCCATTTGTATTCCTCTCCAA

NCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCCCAACCTCCTATTTCCTGAGGTTGCCTTTTAATATTCTTTCTG
CTCGCTCTTGGAGCTTCAATCCTTTTCCCTCACCCAATACCACCAAATCA
GGTTACCCTCTCCCCTCCCCGATATGCCCCCACCCCATTCACTTTCCCTC
CCAAGTCCTTCCCTCCCTCCCCACTTATGATTGCTTTCTTCTCTCTCCCA
AGTGGGACTGAGGCTTCCTCACTTGGGCACTTCAGCTTGTTGAGCCTTTT
AAATTCTGTGGACTGTATCTTCTGTATTCTGTATGTTTTTGTTTGTTTGT
TTGGTTGGTTGGTTGGTTGNNNNNNTNNTNNNNTNNNTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTNTNTTTNTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTT
TNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNTTTTTTT
TTTTTTTTTTTTTTTTTTTNTTTTTNTTTTTTTNTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTNNTT
TTNTTTTTTTNTTTTTTTTTTTTTNTTTTTTNNTTTTTTTTTNTTNNTTT
TTTTTTTTTTTTTTNTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTNTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_l17.b1 MSMg01no371_l17.b1 CHROMAT_FILE:
MSMg01no371_l17.b1 PHD_FILE: MSMg01no371_l17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:17 2005
         (410 letters)



>mm_chr10_92108704_92109513
          Length = 810

 Score =  793 bits (410), Expect = 0.0
 Identities = 410/410 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaatctcaggactggttctgagcttggaacttcattcatttaagcaggagaaatgttgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 ttaatctcaggactggttctgagcttggaacttcattcatttaagcaggagaaatgttgc 463

                                                                       
Query: 61  tcaaattaacatgaaccggtcagcagagtcatttcattactgaggtcagactccagactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tcaaattaacatgaaccggtcagcagagtcatttcattactgaggtcagactccagactg 403

                                                                       
Query: 121 ttgcttgagtgagtttagctgttgggagaccagggggtctgcctcataaaaagacctgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 ttgcttgagtgagtttagctgttgggagaccagggggtctgcctcataaaaagacctgtt 343

                                                                       
Query: 181 ttgttggaagcttcttcacgaagtgcatggcttggaatatgttaagctcttctttagtga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ttgttggaagcttcttcacgaagtgcatggcttggaatatgttaagctcttctttagtga 283

                                                                       
Query: 241 acaaagtcataaaaatatgtgagcacacagacaaggattcatgtctgggatctcatgggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 acaaagtcataaaaatatgtgagcacacagacaaggattcatgtctgggatctcatgggg 223

                                                                       
Query: 301 ctcactgtctttccaagactggtttgcttgtctttcctttcctttccttttttttttcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ctcactgtctttccaagactggtttgcttgtctttcctttcctttccttttttttttcat 163

                                                             
Query: 361 ttaagatgccagcaaaaagccgtggtattttatttttgtctctggtaaat 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 ttaagatgccagcaaaaagccgtggtattttatttttgtctctggtaaat 113


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space:   321201
Effective search space used:   321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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