Query= MSMg01no371_m24.b1 MSMg01no371_m24.b1 CHROMAT_FILE:
MSMg01no371_m24.b1 PHD_FILE: MSMg01no371_m24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:24 2005
(507 letters)
>mm_chr10_13059905_13060811
Length = 907
Score = 911 bits (471), Expect = 0.0
Identities = 498/511 (97%), Gaps = 8/511 (1%)
Strand = Plus / Minus
Query: 1 tctataacagcatcgctaaatgaggatacaggtagctgcatttgtaattgggtgaacttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 tctataacagcatcgctaaatgaggatacaggtagctgcatttgtaattgggtgaacttt 479
Query: 61 gggcccagccacgatgatgaatagattcatcacataagaagcaattgagtgccttttcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gggcccagccacgatgatgaatagattcatcacataagaagcaattgagtgccttttcaa 419
Query: 121 ggcctttggagctactgctgattagcataacatttttaattacgacagactgaaagggca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ggcctttggagctactgctgattagcataacatttttaattacgacagactgaaagggca 359
Query: 181 agccaattggattttgcaatcttcagagtgatgagcataacagctttgctagttttaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 agccaattggattttgcaatcttcagagtgatgagcataacagctttgctagttttaaaa 299
Query: 241 cgtaggttcaaaacaaccgaagaacaaaggcttgatgggctacagtgaaattaagtaatt 300
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 cgtaggttcaaaacaaccaaagaacaaaggcttgatgggctacagtgaaattaagtaatt 239
Query: 301 acatgaacctaagttcacaccaagtatgatatggctactttttatttattac----tttt 356
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 238 acatgaacctaagttcacaccaagtatgatatggctactttttatttattactttttttt 179
Query: 357 tttaaaaaaagttgtggttagtttcacagtgagacaaacatccattgtttgagagaatac 416
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ttt----aaagttgtggttagtttcacagtgagacaaacatccattgtttgagagaatac 123
Query: 417 ttctttaaattttgacatctgcacatgcccctgcagtccacactccatcgggatgaagaa 476
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 122 ttctttaaattttgacatctgcacatgtccctgcagtccacactccatcgggatgaagaa 63
Query: 477 agaatatatccaccttctaagcgtgtccagg 507
|| |||||||||||||||||| |||| ||||
Sbjct: 62 aggatatatccaccttctaagagtgttcagg 32
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space: 445809
Effective search space used: 445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no371_m24.g1 MSMg01no371_m24.g1 CHROMAT_FILE:
MSMg01no371_m24.g1 PHD_FILE: MSMg01no371_m24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:24 2005
(517 letters)
>mm_chr10_12871071_12871987
Length = 917
Score = 934 bits (483), Expect = 0.0
Identities = 508/517 (98%)
Strand = Plus / Plus
Query: 1 tccactctgtgctcccagccaccactaagctctggaaaaaagggtgaggaatggggccaa 60
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 201 tccactctgtgctcccagccaccactaagctctggaaaaaggggagaggaatggggccaa 260
Query: 61 gtcactggttacgctcaggatagccagctggcctttttcacaaataaaaactacttctgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcactggttacgctcaggatagccagctggcctttttcacaaataaaaactacttctgt 320
Query: 121 ttgctggttcccttcgccctctttggcccctaatactaatactggcaagctccgtggagt 180
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 ttgctggttcccttcaccctctttggcccccaatactaatactggcaagctccgtggagt 380
Query: 181 ggatagaaccatctgtgataataacagttgctggtactgctgttccgggtggaagaagcg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggatagaaccatctgtgataataacagttgctggtactgctgttccgggtggaagaagcg 440
Query: 241 ctgaagatacagacttctccacacttaggttggattcaagcctaaagctgccagagtcct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgaagatacagacttctccacacttaggttggattcaagcctaaagctgccagagtcct 500
Query: 301 tcaaaattgtgattttcaagaccagcaagaggaaagggcttttggaaagggaaaggacag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcaaaattgtgattttcaagaccagcaagaggaaagggcttttggaaagggaaaggacag 560
Query: 361 ccgaggaaacttctgggccagtcccttactcccaacaactcctccagttatgggggatta 420
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 561 ccaaggaaacttctgggccagtcccttactcccaacaactcctccagttatgggagatta 620
Query: 421 gtgttatttgcaggcgaaagtaaatctcanaccttgcctacnaataaccaatcatacaat 480
||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 621 gtgttatttacaggcgaaagtaaatctcaaaccttgcctacaaataaccaatcatacaat 680
Query: 481 gacaatgggaaatcgaaccctctccaccaaccaccaa 517
|||||||||||||||||||||||||||||||||||||
Sbjct: 681 gacaatgggaaatcgaaccctctccaccaaccaccaa 717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space: 459849
Effective search space used: 459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
