BAC Information

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BAC

Clone NameMSMg01-372H10
Chromosome10 (Build37)
Map Location 10,109,191 - 10,109,657
singlet/doubletsinglet
Overlap genenone
Upstream geneE130306M17Rik, LOC666658, LOC620417, Stxbp5, LOC100039238, LOC665110
Downstream gene9130014G24Rik, Rab32, EG382450, Grm1, Shprh, Fbxo30, Epm2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372H10.T7 (MSMg01no372_h10.b1)MSMg01-372H10.TJ (MSMg01no372_h10.g1)
ACCAG478721AG478722
length745757
length of high quality
(start - end)
535 (63 - 597)467 (72 - 538)
definitionCHROMAT_FILE: MSMg01no372_h10.b1 PHD_FILE: MSMg01no372_h10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:13 2005CHROMAT_FILE: MSMg01no372_h10.g1 PHD_FILE: MSMg01no372_h10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CCAGTTCCTGTACAAGTTTGAACTTTCACTAACAATGGATGAGTGTATCC
ATAACTCCACTTCCTCACCAGCTGTCACTTGTTCCATTGATCTTGGACAT
TCTTGAAGGTGGAAGGTGAAATCTCAAAGTAGTTTTGATTTGCTTTTCCT
CTAGATGGGTAACAATGTTGACCATTTCTTTAGTGTATCTCAGCCATTTA
AATTTCCTCTTTTGAGAATTCTCTCTATAGATCTGAACCCAATTTTTAAT
TGAGTTATTTATTTTTTTCTATTTTGAGTTCTTTGTATATTTTGAATATT
AGCCCTTTATTGGATGTGCAATTGGTAAACAATTTTCCCCATCCTGTAGG
CTGCCATTTTGACTGATAATATCCTTTGCCAGGCATGCAGAAGCCTTTCA
GTTTTATGAGCTCCCATTTATTTGTTGATCTAGTGCCGGTACTAATGGTG
TTCTGTTAAGAAAGCATTTTCCTATGCCAATGATTTGAATGAAGCCAGTA
AGGTGAACAAGTATTTGATATGAATGGAAGCCCACTCTATGGGATGGAAC
CTATATCCAACACTGCTTAGGTGACCCAGAACCTGAAACTAGATAGCCCA
GACCAAGGATAATACCCAATACTACTGTCCTACTAAAGGAATCTAGTGAT
AAAATGAACCCTAATGACCTTCCACTATACTCCTAGAAAATAGTA
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAAGGGACCCATAGCACACACACAGCCCC
TACCTATAGTCTTCAAAGGTAGCATGACTTCCTCAGGCCAAGAAGCAGTG
TGGGCTGCCTGCTGAATGGATGAGAGACCCTGGCCTTCCACCAGATGTTG
CCTCTCGCCTTATTTTAATTCCTTCATGTTTTTAATCACATTCCACATTA
GCGAATCATGACAAACTTAGTGGATATAGGCTGAAAGCCAAGAGACCTGC
TTTTGCTCCTAGTTTCCTTTCTGTAACTCTATTATTTTGAAATTATTCCT
GTTTTCTATGGATGATTTTTTTGTTCACTTGCTTGCTTGCTTTTTGTTTG
TTTTGAGGTTCATTTCAGCCTTTCATCTCATGCACTATTTTATGAAAATT
AGAAATACCTTTCTAATGAATGGTAGGAACAGGGACTGTTTCTGACTCTG
TTGCCTGACTTTGGATCCCTTTCCCCTAACTGGACAGCTTTATCTCATAA
AAGCAGGGGGAGGGAGGATGTGATACTTTGTTTTCTCCCCCCCCTCTTCC
TTTTCTTTATTTCCCACTTCTTTCCTATATCTCCCTCTCCAACACCTTCC
TCTTTTTTTCACCAACACCCACCTTCCTATTCTCCTTTTTTCTCCCTTTT
TTTTCTTTTCTTCACCCCCCCCCCTTTTCCCCCCTTTTTTTTTCTTTTTT
CCCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_h10.g1 MSMg01no372_h10.g1 CHROMAT_FILE:
MSMg01no372_h10.g1 PHD_FILE: MSMg01no372_h10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:13 2005
         (467 letters)



>mm_chr10_10109054_10109920
          Length = 867

 Score =  903 bits (467), Expect = 0.0
 Identities = 467/467 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagggacccatagcacacacacagcccctacctatagtcttcaaaggtagcatgacttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 caagggacccatagcacacacacagcccctacctatagtcttcaaaggtagcatgacttc 545

                                                                       
Query: 61  ctcaggccaagaagcagtgtgggctgcctgctgaatggatgagagaccctggccttccac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 ctcaggccaagaagcagtgtgggctgcctgctgaatggatgagagaccctggccttccac 485

                                                                       
Query: 121 cagatgttgcctctcgccttattttaattccttcatgtttttaatcacattccacattag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 cagatgttgcctctcgccttattttaattccttcatgtttttaatcacattccacattag 425

                                                                       
Query: 181 cgaatcatgacaaacttagtggatataggctgaaagccaagagacctgcttttgctccta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 cgaatcatgacaaacttagtggatataggctgaaagccaagagacctgcttttgctccta 365

                                                                       
Query: 241 gtttcctttctgtaactctattattttgaaattattcctgttttctatggatgatttttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 gtttcctttctgtaactctattattttgaaattattcctgttttctatggatgatttttt 305

                                                                       
Query: 301 tgttcacttgcttgcttgctttttgtttgttttgaggttcatttcagcctttcatctcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tgttcacttgcttgcttgctttttgtttgttttgaggttcatttcagcctttcatctcat 245

                                                                       
Query: 361 gcactattttatgaaaattagaaatacctttctaatgaatggtaggaacagggactgttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 gcactattttatgaaaattagaaatacctttctaatgaatggtaggaacagggactgttt 185

                                                          
Query: 421 ctgactctgttgcctgactttggatccctttcccctaactggacagc 467
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 ctgactctgttgcctgactttggatccctttcccctaactggacagc 138


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space:   391649
Effective search space used:   391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)