BAC Information

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BAC

Clone NameMSMg01-372L23
Chromosome10 (Build37)
Map Location 72,797,211 - 72,797,601
singlet/doubletsinglet
Overlap geneLOC432471
Upstream geneZwint, LOC544705
Downstream geneLOC100039981, LOC623191, Pcdh15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372L23.T7 (MSMg01no372_l23.b1)MSMg01-372L23.TJ (MSMg01no372_l23.g1)
ACCAG478939AG478940
length779809
length of high quality
(start - end)		484 (39 - 522)390 (68 - 457)
definitionCHROMAT_FILE: MSMg01no372_l23.b1 PHD_FILE: MSMg01no372_l23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:34 2005CHROMAT_FILE: MSMg01no372_l23.g1 PHD_FILE: MSMg01no372_l23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
AACAGACTCCTCTCTGATGACTGAGAAGCACTTTAAACAATGTTTAACAT
CCTTAATCACCATGGAAATGAAAAGAAAAAGAACTCTGACTTTCCATCTT
ACACCCTTCAGAATGGCTAAGATCAAGTACACAAGTGACTGCACATACTG
GAGAGGAGGATGTGGAGCCAGGGAAACACCCTTCCATTGCTGGTAGGAGT
GCAAACTTGTACATCCACTTTGGAAATCAATTTGCTAGTTTCTCAGAAAA
TTGCAAGTAGTTCTACATCAAAACCTAGCTATACCACTCCTAGGCATGTA
CCCAAAAGATATCCCACTAGGCCACAGAGGCACTTCCTCAACTATGTTAT
AGCAGCTTTTTTGGTAAAAGCCAGAAACTGGAAATAACTTAGATGCCCCT
CAACTGGAGAAAGAAGAAAGAAAATGGGGTCCATTTACACAATGGAATAC
TACTCAGATACTAAAATCAAAGACATCATGAGATTCACAAACAAATGGAT
GGAACTAGAAAATATCATCCTGAATGAGGAAATACAGAAAGGCATTCATG
CAATGTACTCACCATAAATGGAAATTAACCCTACAGAAAAGGATTCCCCC
AAAACAATTTATTCCTCCTTTTAGCCCAAACAAGGGAGCCAAAATTTTGC
CTACCCAAAGGAAAACTGAAAAGTTGGGGTGTTAAAATCCAAAAATCCAA
AGCTTTCCCGAAAGGGAGTAATTAAAAAG

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATGACTGGTGGCATGGAAAGAATATTTAAGGTA
ACTTGTAAGGATGACTTGTAATACGACTATGATCAAAATTGCTCAAAAAG
TGACACTTGGGATATGAGATGTTTTAAAGAAAGGGTTATGATTTCTGAGA
AGTATTGGGCCTTATTTACAATATAATGGAAACTGATATCCAAGTTGACA
TCCTTGGTATCCAAATCAGGGCGAACCAATTCCCTAACCTAAATTATCCA
AATCTGATAGCTTAGAATGTTTGCGATGGATTCTCCTCCAAAGTCAGAAT
AAAAAATGACAAAGGCCAGTTTGATATGTGGTACAGACTTTTGGTCCCCG
TAAGAGGAAGGAAAGGGCATTTGTATATCTGTGAGTTCAAAGCATGTCTG
CTCTCCATAAGGAGTCCTAGAACTGCCAGAAGTATACATGGGATCCTTTC
TAAACAAAAAATACCAACCCTACAAACAAACCAACCCCAATATCTTCTTG
TAAGAACATCCTTTTGATGTATTTCTGGCCCAACACTGTGGAGGGATGTT
TTCCTTCCACGCAAAGAATTCCCTCCCCGCCTTTTTGGGGTTTTGCCTTT
TAAAAATTATTGAGAAATTCCTTTTTTTTAAAAAAATTTTTAAATTGGCA
TTTAAAATAGATCCCCCCCTTTGAAATTTTTAGCTCTCCCCTCCCCCCTT
TTTTAAAAATTCCACAAAAAAAACCCCTGGTACCTCTCCAATTTTATGTT
GTATAAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_l23.g1 MSMg01no372_l23.g1 CHROMAT_FILE:
MSMg01no372_l23.g1 PHD_FILE: MSMg01no372_l23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:34 2005
         (390 letters)



>mm_chr10_72797011_72797801
          Length = 791

 Score =  725 bits (375), Expect = 0.0
 Identities = 387/391 (98%), Gaps = 1/391 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgactggtggcatggaaagaatatttaaggtaacttgtaaggatgacttgtaatacgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 atgactggtggcatggaaagaatatttaaggtaacttgtaaggatgacttgtaatacgac 532

                                                                       
Query: 61  tatgatcaaaattgctc-aaaaagtgacacttgggatatgagatgttttaaagaaagggt 119
           ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 531 tatgatcaaaattgctcaaaaaagtggcacttgggatatgagatgttttaaagaaagggt 472

                                                                       
Query: 120 tatgatttctgagaagtattgggccttatttacaatataatggaaactgatatccaagtt 179
           |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 471 tatgatttctgagaagtattaggccttatttacaaaataatggaaactgatatccaagtt 412

                                                                       
Query: 180 gacatccttggtatccaaatcagggcgaaccaattccctaacctaaattatccaaatctg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 gacatccttggtatccaaatcagggcgaaccaattccctaacctaaattatccaaatctg 352

                                                                       
Query: 240 atagcttagaatgtttgcgatggattctcctccaaagtcagaataaaaaatgacaaaggc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 atagcttagaatgtttgcgatggattctcctccaaagtcagaataaaaaatgacaaaggc 292

                                                                       
Query: 300 cagtttgatatgtggtacagacttttggtccccgtaagaggaaggaaagggcatttgtat 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 cagtttgatatgtggtacagacttttggtccccgtaagaggaaggaaagggcatttgtat 232

                                          
Query: 360 atctgtgagttcaaagcatgtctgctctcca 390
           |||||||||||||||||||||||||||||||
Sbjct: 231 atctgtgagttcaaagcatgtctgctctcca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 791
Length adjustment: 9
Effective length of query: 381
Effective length of database: 782
Effective search space:   297942
Effective search space used:   297942
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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