BAC Information

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BAC

Clone NameMSMg01-373H14
Chromosome10 (Build37)
Map Location 91,756,500 - 91,757,095
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041799, LOC667203
Downstream geneLOC216229, LOC100041814, Nedd1, Gm872, 4930485B16Rik, EG667314, Pctk2, Elk3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373H14.T7 (MSMg01no373_h14.b1)MSMg01-373H14.TJ (MSMg01no373_h14.g1)
ACCAG479496AG479497
length710763
length of high quality
(start - end)
601 (18 - 618)358 (76 - 433)
definitionCHROMAT_FILE: MSMg01no373_h14.b1 PHD_FILE: MSMg01no373_h14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:26 2005CHROMAT_FILE: MSMg01no373_h14.g1 PHD_FILE: MSMg01no373_h14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCCTATTTCGAGAGGATCCGCGGAATTCTTTCTTTGCCTGCTTTCTGTC
TTCTTGCTGTGCATTTTAGCTGACGGGCTCTCTATTGATGGCTTCAAATT
CCACATAGATGTTGCTGAACATGTTGCTCAACCTACATGTCCTGATCCTG
CTTTTTGAGTCAAAGACCTGGACAGAATCCTGGTTTTATTACTCGTGAGT
TGTTTGCCTTGAACATGGCACAGGCTGCTGGAACCATGTGCCTTCACCTT
AATCTAGCAATGGAAGTTCACAGAGGCCATGGTTGTGGGACCTTTTTTAG
ATAGTACAGTTGCTCATACAGCCACCTCATGTATAAAAGAGAAGATTATC
CATGCCCTATTTCTAGCCCTTCCTTCATGTTAATGCCAAAAACTCAGCAG
TAAGAATAACATGAAAAAGCTTAGACTTGTAAGGAAGCTCCGTTTGTATC
ACGCAAGGAACCATTTGCTAGTGTGCATCTAAGATCAGGCAAATGTCAAA
AAGCAATCTTGTTCAGCTCTGCTCTGGATCTGTTAGGGACTTCTTAGCTT
ACTGACCGGAGAAGGGTCAGATGGACCTCTGGACTGTGGCCATGTAAACC
AATACTGTGGATAGCGTAAACCATCGCTAAAAAACAGTGATTCTCAGTAG
CTTCAAACATAGAGTCCAGGCAAGCAAGGGGCCGAAGCACTGACCACTTT
TTCTACATTC
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTCATACATATATACATACATACA
CACAGATACATATGTACATTCATACTACCAGCACACTGATATACACACAT
TTGCATACAAACATTCACCTATACATATATGTATAGGCATACACAGTGTG
TTGGTTTGAATGAAAATGGTCCCTACAGGTTTATAGGAAGTGGTGTCTTT
AGGAGGTGTGGCCTTGTTGGAGTAGGTGTGGCCTTGATGGAGGAAGTGAG
TTACTGAATGCTTTTATTTTTTAAATGCTCAAGGCAGGCTCAATGTCACT
TTCTCTTCCTGCTGCCTGCCAATCCCGACAGAACCATGTCTGACTACATG
CCACCATGCTTCCTGCCATGATGACTATGGACTAAACCTCTGACCTGTAA
GTCAGCTTCATTAAATGTTTCCCTATATAACAGTTGCTATGGCCATGGTG
TCTCTTTGCAGCAATAGAAATCCTAACTAACACTCTTACATAGATCCCTA
TGTATATATATATTAGTATACCACCCCTACTTTGCCTGCCCTTTGTTTTC
CGCATATATACCACACTCTAACTCATATTTTGCATCCCTCAGGTTTCCCT
AATACTCCATTTATTGTTTTATTTTTACTTATCTTAAATACCCCTACCTC
TACTTATTTTATTTCTATAACATTCAACCTTTGTTCCTCCTTACTTCTCT
GCCCTTGCTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_h14.b1 MSMg01no373_h14.b1 CHROMAT_FILE:
MSMg01no373_h14.b1 PHD_FILE: MSMg01no373_h14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:26 2005
         (601 letters)



>mm_chr10_91756295_91757295
          Length = 1001

 Score = 1093 bits (565), Expect = 0.0
 Identities = 588/601 (97%), Gaps = 10/601 (1%)
 Strand = Plus / Plus

                                                                       
Query: 6   ggaattctttctttgcctgctttctgtcttcttgctgtgcattttagctgacgggctctc 65
           ||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ggaattctttcttgggttgctttctgtcttcttgctgtgcattttagctgacgggctctc 265

                                                                       
Query: 66  tattgatggcttcaaattccacatagatgttgctgaacatgttgctcaacctacatgtcc 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tattgatggcttcaaattccacatagatgttgctgaacatgttgctcaacctacatgtcc 325

                                                                       
Query: 126 tgatcctgctttttgagtcaaagacctggacagaatcctggttttattactcgtgagttg 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tgatcctgctttttgagtcaaagacctggacagaatcctggttttattactcgtgagttg 385

                                                                       
Query: 186 tttgccttgaacatggcacaggctgctggaaccatgtgccttcaccttaatctagcaatg 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tttgccttgaacatggcacaggctgctggaaccatgtgccttcaccttaatctagcaatg 445

                                                                       
Query: 246 gaagttcacagaggccatggttgtgggacctttttta-----gatagtacagttgctcat 300
           |||||||||||||||||||||||||||||||     |     ||||||||||||||||||
Sbjct: 446 gaagttcacagaggccatggttgtgggacct-----accagagatagtacagttgctcat 500

                                                                       
Query: 301 acagccacctcatgtataaaagagaagattatccatgccctatttctagcccttccttca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acagccacctcatgtataaaagagaagattatccatgccctatttctagcccttccttca 560

                                                                       
Query: 361 tgttaatgccaaaaactcagcagtaagaataacatgaaaaagcttagacttgtaaggaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgttaatgccaaaaactcagcagtaagaataacatgaaaaagcttagacttgtaaggaag 620

                                                                       
Query: 421 ctccgtttgtatcacgcaaggaaccatttgctagtgtgcatctaagatcaggcaaatgtc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctccgtttgtatcacgcaaggaaccatttgctagtgtgcatctaagatcaggcaaatgtc 680

                                                                       
Query: 481 aaaaagcaatcttgttcagctctgctctggatctgttagggacttcttagcttactgacc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaaaagcaatcttgttcagctctgctctggatctgttagggacttcttagcttactgacc 740

                                                                       
Query: 541 ggagaagggtcagatggacctctggactgtggccatgtaaaccaatactgtggatagcgt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggagaagggtcagatggacctctggactgtggccatgtaaaccaatactgtggatagcgt 800

            
Query: 601 a 601
           |
Sbjct: 801 a 801


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space:   585681
Effective search space used:   585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)