BAC Information

Click to search

BAC

Clone NameMSMg01-373N17
Chromosome10 (Build37)
Map Location 10,549,129 - 10,549,636
singlet/doubletsinglet
Overlap geneGrm1
Upstream geneStxbp5, LOC100039238, LOC665110, 9130014G24Rik, Rab32, EG382450
Downstream geneShprh, Fbxo30, Epm2a, EG666732, LOC100039343
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373N17.T7 (MSMg01no373_n17.b1)MSMg01-373N17.TJ (MSMg01no373_n17.g1)
ACCAG479788AG479789
length7321,229
length of high quality
(start - end)		514 (12 - 525)---
definitionCHROMAT_FILE: MSMg01no373_n17.b1 PHD_FILE: MSMg01no373_n17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:54 2005CHROMAT_FILE: MSMg01no373_n17.g1 PHD_FILE: MSMg01no373_n17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATATTCAGAGGATCCGCGGAATTCACTTCCTGTCTAAGATCTCTGGGACT
GAACTTACATAGCATCTAAAACTTTTAGTATATAAGTGGAACAGAGGAGA
AAGAATATGAAGCTAGACTCCATGCTAGAACTTTCTACCAATAGAATCAC
GGAATGAGGAAAGAGACAGAACACATGGTGAACTTGTGGTAGAGCAGAGT
TTACTCTCTAAGAAGGAGCATCTCCCTGCTCTTCTGGGCAGGGAGGGAAT
GGTAGGTCCCCATCTGTCATAGACATCCCATTGAACTCACTCTTTGTAGT
ATTGGAACACTCACATTATCAGTCGATGGGAAGATGTCATCCCCAGTAAA
GACACTTATTTGAACGTGTAATCTCAAACAGCACCCAGATGCTAATATAG
AGTGGAAACTATTCTGAGATATTCATAAAGGGAAGAGCAGTTTTGCAGTC
TTCCTGACTCTGAAGTCATCTTGTGCCCTGCACTTTATCTTCTTCTTCCA
TCTAACATCTTTATTTCTATTTAAAAAAAAAAGACTTANGCCCATAAAAC
GTTATTCTTTAGAAAATGTTATTAACAGTGTGCCATTAGGGCAATAAAAT
GCCTTGCTAATTCGCCACTGTTCTAAATCTGTCTGATAGGGCATGGAGAG
GCAAAAATTTGGGAGCACTGCCTAGAAATGGCCCCAAGGGGCCTCCCCAT
TTCAAAAATTAAAGACAAGAAAGTTTTTTTTG

CCAACCACACATTACTCCCCAGGGACCCACCTATCCATACAAACGCGAAA
AAAAACCCACAAGNTACTAACAAAAAGTATGAAGAGGAGAGCAGGGGGTG
TGGTGGAGTGGGGGGAGAGCGGAACTATAATGTCTCCGCCGCGTGGCTCT
ATTGGGGTGCATCTCAGGCACAGCTGTAATGTCGATTTGTATTGTATTGG
TATGAAAGTCTACACAGAGGCGGAACAAAGGGAGTGATGGCGGGTAGCCG
TCGTGTTCTTTTCCACCCCATATCGCCCCGTCTGCTAGCATTACCTAGAG
ACGTATTGAACTAATCCAGACCGCATAGAATGTAGAGTCGCCCTTGTTCT
CTGGTTACGGCAGCCGGGACGTGACGTCACGAGGTAGACGTGCCCGCTAC
GTCCTCCATCTACAACAAATAGAGATATAACGGTATGCTCTGGAGAATTA
TGTGTGTCGACTTGTGTGTGTAATAAAGCTGATAGATGTTGATTTCTCCC
GACCGTGTTTGTTTATACTCTGTGCTGGCGATCATAACAGCGTACAGCTC
TTTCATAATACTTACTATGCACACTTACCCTCTTGTTACAGCACCCTTAT
CTACTCTCTATTCATTCTTATTTGCATTGCACCCGGTCAATCTCCATCCA
GATGTCTCACCACATACCTATGCTCTATACACCTCCTCGTCTTTTACCCA
CAGCAATAATAACTGCTCCGCTCACCTTATTTTCTATGTCCCATACTTCT
CACGCCTTGATGCTAATGTACAGCCAAACAACAGCTTGCGATCACCAACT
CATGGCGGTTAGTCCACGCCGTATAAGCCTAATTGACTCCCGCCACCACC
ATGTATACGCTGCTCCCCGCCACCTAGCTGCACACTATTCGAGCCATGTG
AGCGCCTATACTGATTGCGTGTTTTAGTCAAAGCTAGCACACTTCATTAA
TAGTAATACTTTCCTGGATGACAAGGAGACTCCTAATGCACAAAATGTAA
CATCCCAACCGAGCCAATGATATTCGTCCTGATCTCCTTTATATCTATGC
TACAATTACAGCTCATGACTACATTTCGGCCCTTGCAAATATCTATATAA
TGAGACAAGTAAGAGTGAAGTGAGGTCAAAATATCTAGAGCTAAATTATG
ACTAGTGTAATGACGAATTGACACAACTCTTGATCATGCAGNCGCATGTG
CGCAATGTGAGTATGCAAGAAACAATCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_n17.b1 MSMg01no373_n17.b1 CHROMAT_FILE:
MSMg01no373_n17.b1 PHD_FILE: MSMg01no373_n17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:54 2005
         (514 letters)



>mm_chr10_10548922_10549835
          Length = 914

 Score =  888 bits (459), Expect = 0.0
 Identities = 496/509 (97%), Gaps = 3/509 (0%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattcacttcctgtctaagatctctgggactgaacttacatagcatctaaaacttttag 67
           |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattcacttcctgactaagacctctgggactgaacttacatagcatctaaaacttttag 267

                                                                       
Query: 68  tatataagtggaacagaggagaaagaatatgaagctagactccatgctagaactttctac 127
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 268 tatataagtggaacagaggagaaagaatatgaagctagactccatgctggaactttctac 327

                                                                       
Query: 128 caatagaatcacggaatgaggaaagagacagaacacatggtgaacttgtggtagagcaga 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 caatagaatcacggaatgaggaaagagacagaacacatggtgaacttgtggtagagcaga 387

                                                                       
Query: 188 gtttactctctaagaaggagcatctccctgctcttctgggcagggagggaatggtaggtc 247
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 388 gtttactctctaagaaggagcatctccctgctcttctgggcagagagggaatggtaggtc 447

                                                                       
Query: 248 cccatctgtcatagacatcccattgaactcactctttgtagtattggaacactcacatta 307
           |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 cccatctgtcgtagccatcccattgaactcactctttgtagtattggaacactcacatta 507

                                                                       
Query: 308 tcagtcgatgggaagatgtcatccccagtaaagacacttatttgaacgtgtaatctcaaa 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tcagtcgatgggaagatgtcatccccagtaaagacacttatttgaacgtgtaatctcaaa 567

                                                                       
Query: 368 cagcacccagatgctaatatagagtggaaactattctgagatattcataaagggaagagc 427
           ||| | ||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 568 cagtaaccagatgctaatatagaatggaaactattctgtgatattcataaagggaagagc 627

                                                                       
Query: 428 agttttgcagtcttcctgactctgaagtcatcttgtgccctgcactttatcttcttcttc 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 agttttgcagtcttcctgactctgaagtcatcttgtgccctgcactttatcttcttcttc 687

                                        
Query: 488 catctaacatctttatt--tctatttaaa 514
           |||||||||||||||||  ||| ||||||
Sbjct: 688 catctaacatctttattactct-tttaaa 715


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |