BAC Information

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BAC

Clone NameMSMg01-374A21
Chromosome10 (Build37)
Map Location 9,768,665 - 9,768,945
singlet/doubletsinglet
Overlap geneLOC100039238
Upstream geneEG666625, LOC666636, E130306M17Rik, LOC666658, LOC620417, Stxbp5
Downstream geneLOC665110, 9130014G24Rik, Rab32, EG382450, Grm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374A21.T7 (MSMg01no374_a21.b1)MSMg01-374A21.TJ (MSMg01no374_a21.g1)
ACCAG479940AG479941
length795754
length of high quality
(start - end)		484 (74 - 557)281 (56 - 336)
definitionCHROMAT_FILE: MSMg01no374_a21.b1 PHD_FILE: MSMg01no374_a21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:09 2005CHROMAT_FILE: MSMg01no374_a21.g1 PHD_FILE: MSMg01no374_a21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGTGTGGCTTCTCCTCAGGAAGACAGATAGCAATCTACCTA
AAGATCCAGTTATACCACTCTTGTACATATACCCAAAAGATACATCATCC
TACTACAGAGACCCTTGATCAACCATATTCATTGCTGATCTACTCCCACT
ATTCAGAAATTGGAAAGAATTTAGATGATGTTCTTCAATAGAGGAATGCA
TAAAGAGAATGTGGTATATCTACTCAATGAATATTAGCTGTTGAGTCAAT
GATAACCAAGCTACAATCCTTAGAGAAGGAACTGATTACCATTGATTTAA
GAGCTATCCACAAATACATATTATATTTGTCTGTCGGAGTCTAGGTCACT
CATTTGGGATGATTCTTTCTAGTTTCATCCACTTACCTGTGAATTTCATG
CTTTCACCTTTTTAACATCTGAGTAATGTGTCACTGTGTACCACATCAAA
ATAAAGCTGATACCTATATATATATCAACCCTACATTTTGTATACATTCT
AAAGATGGGTAAAATGACTGCAATATTTCTCTGTTAGTTTAGATAAAACA
TGGCAGTCAGTACCCATGAGTATAGAATTGTTACACAACTCATTTCTATA
TTGAGCATATAATTTATGGTCCATAGTAAGCTCCCCTGAACTATTTATAG
CGAAAGAAGAATCTTTCCTTTCTTTCTATGAACCTATGGGACGAGGACTG
AAAAAACTGAGTTCCCCCTTTTACTGTATTCCGAAAATCTGAGTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTGATAGGAATCATCATCTAGAATAACAGGTACAAGGCCTTCATTT
TCTTTTAAATCTTTATTCAGCTCCTAGAAGTCAAGGAGAATGATGGACAG
TCTGGATGTGTACATCATTGAGACAAGATTTCTATCCACAGAATATAAAC
ATAAGTGAAAAACTCCAGAAGCAAATGATTCTAATAGTGGGCAGCCATGT
GACCCCTTCACAGTTCTTTGAATAGCCTGTGGAGAAATACACATGGGAGC
ATTTTGGTCTGTTTGGGTCACTTAAGGGATGGCTTCACTACAAACTTGAC
ATAACAACTGGGCCTTGAGTGCTGTAGACTATGACTAGGTGGAGACTGGG
ATAAGATCAGGGAGCCATGTAAGCAAAGCTGCGAGGTTCAGAGCACATAA
GTCTGCAAAACACAGCTAAGTCCCAGTGTGCAGGAAGGGTGGAAGAAGGC
TGGAACAGCATATATGGNAAGAAAGTGGACGGGTGAGATAAATTGGTTTT
TCGACTGGTGAGCGTGGGTGGAATTATTTGGTCAAATATTTTGATCGGAT
AAGGGTGTCGGAATATTTATAATTCGGGTGGAATTTTGTCATGTTTTTTC
TTATGGTATGTTTTGTGCTCGTTTTATTACTTTCGTTTCTTTTGTTGTAT
TGAGAAATTGTGCTGCNCCCTCCGTTTTTGAGGTGCTGTTANTGTGTTGT
TGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_a21.g1 MSMg01no374_a21.g1 CHROMAT_FILE:
MSMg01no374_a21.g1 PHD_FILE: MSMg01no374_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:09 2005
         (281 letters)



>mm_chr10_9768465_9769145
          Length = 681

 Score =  536 bits (277), Expect = e-157
 Identities = 280/281 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgataggaatcatcatctagaataacaggtacaaggccttcattttcttttaaatcttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgataggaatcatcatctagaataacaggtacaaggccttcattttcttttaaatcttta 260

                                                                       
Query: 61  ttcagctcctagaagtcaaggagaatgatggacagtctggatgtgtacatcattgagaca 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 ttcagctcctagaagtcaaggagaatgatgggcagtctggatgtgtacatcattgagaca 320

                                                                       
Query: 121 agatttctatccacagaatataaacataagtgaaaaactccagaagcaaatgattctaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatttctatccacagaatataaacataagtgaaaaactccagaagcaaatgattctaat 380

                                                                       
Query: 181 agtgggcagccatgtgaccccttcacagttctttgaatagcctgtggagaaatacacatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtgggcagccatgtgaccccttcacagttctttgaatagcctgtggagaaatacacatg 440

                                                    
Query: 241 ggagcattttggtctgtttgggtcacttaagggatggcttc 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggagcattttggtctgtttgggtcacttaagggatggcttc 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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