BAC Information

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BAC

Clone NameMSMg01-374E05
Chromosome10 (Build37)
Map Location 34,783,921 - 34,784,418
singlet/doubletsinglet
Overlap genenone
Upstream geneBB146404, A630077B13Rik, Dse, Tspyl1, Tspyl4, Nt5dc1, Col10a1, Frk, LOC667824
Downstream geneLOC100041585
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374E05.T7 (MSMg01no374_e05.b1)MSMg01-374E05.TJ (MSMg01no374_e05.g1)
ACCAG480100AG480101
length776776
length of high quality
(start - end)
250 (70 - 319)497 (57 - 553)
definitionCHROMAT_FILE: MSMg01no374_e05.b1 PHD_FILE: MSMg01no374_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:27 2005CHROMAT_FILE: MSMg01no374_e05.g1 PHD_FILE: MSMg01no374_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACTGCTTTAACACCTCACTAGTACTACATTGAATAAAGGTACCACATG
TTCTGTATCCATTCCATTATTGAGGGATATTTGGGTTCTTTCCAGCTTCT
GGCTATTATAAACAAGGTTGCTATGAACATAGTGAAGCATGAGTCCTTAC
TACAGGTTGAAGCATATTCTGGGTATATGCCCAGAAGTAGTATTGCTGGG
TCGACAGGTAGTACTATGTCCAATTTTCATATGAACCGCCAAACTGATTT
GCTGAGTAGTTGTACCAGTTTGTTTTCCCACCAGCAAGGGAGGAGTGTTC
CTCTTTCTCCACATCCTTACCAGCATCTGCTGTCACCTGAGTTTTTAATC
TTACTAGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTG
ATGACTAAGGATGTTGAACATTTTTTTAGGTGCTTCTCAACCATTTGGTA
TTCCTCAGCTGATAATTCTTTGTTTAGTTTTGCACCCCATTTTTAAATAG
AGTTTATTTGGTTTTCTGGAGTCTTACTTCCTGAGTTCTTTGCATATATT
GGATATTAGCCCTCTATCTTTTCCCAATCTGTTGGTTACCGTTTTGTCTT
ATAAACAAGTGTCCTTTTGTCTTTTTGCATCCTTTTTAATTTTATGATTT
CCCTCGTGCCTACTTCCTGATCCTTACCACACAAATCATTGGCTATTTGC
TCCACTGATCACTTTCCTCTTGTTCN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXACCAGGAAAATGAAAAGTTGGCACCTGTGGTATGATTAAGGCCT
TTTATTATCCTCATTGTGAAGCAAAAAGACCCTGTATGTTATAGGGGGGG
AAGCTTTTGAATTGTTTTTGTTCTGGGGCCTGACTCATTTAATTTATGAG
AGGTGAGGTTACAGACAGTTTTTAAAACATGAGGAGAAAAAAAGATAGAC
TTTCTGTCATTTAGGAGTTTACAACTTACTGAGAGAAGATTTATAATGTG
AGATGTTCTCTGTAGAGATATTTTAAAAAATTACATTCTATTAGAGGATG
AAGGACATGAAATAGAAAAAAGTGAATTATTGAGATATTCTGGTTGATTA
CCTCCTGCTCCCCCTTTTCCCCTGGCTCAGAGAAAAAGAAGAAATGTCTT
TGATTATCTTCCTGCTTACTCTTATAGCTGTGGTGGCCTTGGATTGACGT
TGCCTCTGACAGTTTCAGGCTTGGTTGCTTTTATGCAGTACACAAATAGC
ATCATAAAGAGGATTTACAAAAGGAGAGAGTGCACATTCAGTGATCAGAG
TTTGAAAAAAAAAACCTTTGAGCTTACTTTTTAAAATATCCTGGTTAAAA
AAATTACCGGGACATCAATATTATTTTGCATGTCCCATCTTCAAGTGTGC
TTGCTCCTTTGGAAACTTAAGAAAGGGGCCCTTTGTCTCTAAATAGAAAT
TATAAAAGGATTGGCGTACTTTCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_e05.g1 MSMg01no374_e05.g1 CHROMAT_FILE:
MSMg01no374_e05.g1 PHD_FILE: MSMg01no374_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:27 2005
         (497 letters)



>mm_chr10_34783721_34784618
          Length = 898

 Score =  940 bits (486), Expect = 0.0
 Identities = 495/498 (99%), Gaps = 1/498 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   accaggaaaatgaaaagttggcacctgtggtatgattaaggccttttattatcctcattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accaggaaaatgaaaagttggcacctgtggtatgattaaggccttttattatcctcattg 260

                                                                       
Query: 61  tgaagcaaaaagaccctgtatgttataggggggg-aagcttttgaattgtttttgttctg 119
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 tgaagcaaaaagaccctgtatgttataggggggggaagcttttgaattgtttttgttctg 320

                                                                       
Query: 120 gggcctgactcatttaatttatgagaggtgaggttacagacagtttttaaaacatgagga 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggcctgactcatttaatttatgagaggtgaggttacagacagtttttaaaacatgagga 380

                                                                       
Query: 180 gaaaaaaagatagactttctgtcatttaggagtttacaacttactgagagaagatttata 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaaaaaagatagactttctgtcatttaggagtttacaacttactgagagaagatttata 440

                                                                       
Query: 240 atgtgagatgttctctgtagagatattttaaaaaattacattctattagaggatgaagga 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgtgagatgttctctgtagagatattttaaaaaattacattctattagaggatgaagga 500

                                                                       
Query: 300 catgaaatagaaaaaagtgaattattgagatattctggttgattacctcctgctccccct 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catgaaatagaaaaaagtgaattattgagatattctggttgattacctcctgctccccct 560

                                                                       
Query: 360 tttcccctggctcagagaaaaagaagaaatgtctttgattatcttcctgcttactcttat 419
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttcccctggcttagagaaaaagaagaaatgtctttgattatcttcctgcttactcttat 620

                                                                       
Query: 420 agctgtggtggccttggattgacgttgcctctgacagtttcaggcttggttgcttttatg 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agctgtggtggccttggattgacgttgcctctgacagtttcaggcttggttgcttttatg 680

                             
Query: 480 cagtacacaaatagcatc 497
           |||| |||||||||||||
Sbjct: 681 cagtgcacaaatagcatc 698


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 898
Length adjustment: 10
Effective length of query: 487
Effective length of database: 888
Effective search space:   432456
Effective search space used:   432456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)