BAC Information

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BAC

Clone NameMSMg01-374G24
Chromosome10 (Build37)
Map Location 85,425,882 - 85,426,355
singlet/doubletsinglet
Overlap geneBpil2
Upstream geneRic8b, Fhl4, AI597468, Mterfd3, Cry1, EG666974, Btbd11, EG626858, LOC626878, LOC669723, LOC626940, Pwp1, Prdm4, Ascl4, D10Wsu52e
Downstream geneFbxo7, Syn3, Timp3, EG627035, LOC672902, LOC100041419, EG382395, Hsp90b1, Nt5dc3, Fabp3-ps1, C630002B14Rik, Stab2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374G24.T7 (MSMg01no374_g24.b1)MSMg01-374G24.TJ (MSMg01no374_g24.g1)
ACCAG480234AG480235
length756866
length of high quality
(start - end)		477 (54 - 530)113 (75 - 187)
definitionCHROMAT_FILE: MSMg01no374_g24.b1 PHD_FILE: MSMg01no374_g24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:40 2005CHROMAT_FILE: MSMg01no374_g24.g1 PHD_FILE: MSMg01no374_g24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GAAGAGGATCNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAGCTGGATAGAAAGCCATGACCAGAGCTTCCCTGGAG
GAACACGATGCTTTCTGGAAAGCAGTGCCACCAGGTTCCTTCCTCCCAGT
AGGGACGACACTTCTGGTTCCTTCTACACTGGTGATAGCGAACAGAGAGC
CAGGATAGTAGCGCATGGAGTAGTTTAGGTACAGACCAGGTAAAACTGTG
GAGAGCTAAGAGGCTCCTCAGGTATTAGCCTTCCCTGTGTTTAACCAGGA
GTCCCAGCCACAGGCCTCCCTTTGCACTGCATCATACCCTGAACCTAACA
CATAACTAAAACACCCCCTTTATCTTCAATAAAGCCTAGTATTTGGGTAT
TCTAGGCAGTGTTGCTTTCTGGAAAGATCCAGGTATTAAATGTAAATTAA
AGTTGAAGAGGTATCTCAGTGGTTAAGAGCACATACTGCTCTTGCAGGGA
ACAGGTATCCAGTTCTTACCACCCATGTCAGGTAGCTCATAGGTGTCTCT
ATTTCCAGCTCCGGGGGTTCTGATACTCTCTTCTGGATTTTATGGGCACA
CACGCCAACATACAAATTAAATCTTGACAAGTCCATGGATCTAGAACAGC
AACTTACTTAGGGATACTTCTTGATTTGTTGCTGGGAAAGCCCCCTAAAA
TTAAACTACTTGGGAACCTTGAATATTAAGGTGGCTCCGCACCCCTGGCA
AAAAAT

CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGTCTTTCTGCCTCTGCCGATTAA
GTGCTGGGGTTAAAGGGATCTAATGCCATGCCAACTCTCTAAATACTTCT
AATGCATACTTGGGAAGTGTGTGTGTGTGTGTGTGTGTGCGCCCCTTTCC
CCCCTTGCCCCCTCCCCCCTCCCCCCTCTTCTCTCCTCGTTTTCTTGTGC
TCTTCTTTCCTCTCCTTCGTCCTCTCCTCCCCTCCTCTCCTCCCTCTTTT
GCGCCTCCGCTCTCTCTTTTTTTTTCCTCTTCTTTCCCTTTCTTCTATTT
TTTTTTTTCTTCCCTCTCTTTTTGGCTTCTCCTCTTTTTCCCTTGTCCTT
TCTTTTCTTATCCACCCCTTCCTCTCTCCCCTCCCTCTTCTTTCTATCTC
CCCCTTTTTCGCCCTCCTCCCCCTCCCTTTTCTTCTCCACCCCTATTCCT
TTACCCTCTCCTCCTTTTCCTTTCTTCCCTCCAATTTCCCTCCTCTCCTT
CTTTCCCTTCTCTTCTTTTCCTCTTAGACGTTCCAGTACCCTTCCTTCTT
CCTTCACTTTTATTCATCCTTTTTTCCCCCTCTCATTTCATCCCTATCTT
CCCCCTTTACTCTGTTCTTCTTTCTTCTTGTACCTCCTTCTTTTTCCCTT
TCTCTCCTCCCTTTTTTCTTTTTCCCTTCCTTCTCCTTTCTCCCTCTATC
TTTATCCTTCCCTATCCTCCCACCCTCCCCAGCCTCATCCCTCTTCCTTT
CCTTACCCCTCTTCCTTTTCTTTCCTCTTTTCTCTTTCTTTCTTTTTTTC
CCCTCCTCTTCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_g24.b1 MSMg01no374_g24.b1 CHROMAT_FILE:
MSMg01no374_g24.b1 PHD_FILE: MSMg01no374_g24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:40 2005
         (477 letters)



>mm_chr10_85425679_85426555
          Length = 877

 Score =  909 bits (470), Expect = 0.0
 Identities = 473/474 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagctggatagaaagccatgaccagagcttccctggaggaacacgatgctttct 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagctggatagaaagccatgaccagagcttccctggaggaacacgatgctttct 263

                                                                       
Query: 64  ggaaagcagtgccaccaggttccttcctcccagtagggacgacacttctggttccttcta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggaaagcagtgccaccaggttccttcctcccagtagggacgacacttctggttccttcta 323

                                                                       
Query: 124 cactggtgatagcgaacagagagccaggatagtagcgcatggagtagtttaggtacagac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cactggtgatagcgaacagagagccaggatagtagcgcatggagtagtttaggtacagac 383

                                                                       
Query: 184 caggtaaaactgtggagagctaagaggctcctcaggtattagccttccctgtgtttaacc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 caggtaaaactgtggagagctaagaggctcctcaggtattagccttccctgtgtttaacc 443

                                                                       
Query: 244 aggagtcccagccacaggcctccctttgcactgcatcataccctgaacctaacacataac 303
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 444 aggagtcccagccacaggcctccctttgcactgcatcataccctgaacctaacacagaac 503

                                                                       
Query: 304 taaaacaccccctttatcttcaataaagcctagtatttgggtattctaggcagtgttgct 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 taaaacaccccctttatcttcaataaagcctagtatttgggtattctaggcagtgttgct 563

                                                                       
Query: 364 ttctggaaagatccaggtattaaatgtaaattaaagttgaagaggtatctcagtggttaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttctggaaagatccaggtattaaatgtaaattaaagttgaagaggtatctcagtggttaa 623

                                                                 
Query: 424 gagcacatactgctcttgcagggaacaggtatccagttcttaccacccatgtca 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gagcacatactgctcttgcagggaacaggtatccagttcttaccacccatgtca 677


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space:   404889
Effective search space used:   404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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