BAC Information

Click to search

BAC

Clone NameMSMg01-375C06
Chromosome10 (Build37)16 (Build37)
Map Location 99,745,759 - 99,746,07772,525,678 - 72,526,146
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGad1-ps, LOC100042232, LOC667502, Csl, LOC100042246, Kitl, LOC100043208, LOC100043211
Downstream geneEG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3, 4930430F08Rik, 1700017N19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375C06.T7 (MSMg01no375_c06.b1)MSMg01-375C06.TJ (MSMg01no375_c06.g1)
ACCAG480768AG480769
length748761
length of high quality
(start - end)		496 (54 - 549)469 (86 - 554)
definitionCHROMAT_FILE: MSMg01no375_c06.b1 PHD_FILE: MSMg01no375_c06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:38 2005CHROMAT_FILE: MSMg01no375_c06.g1 PHD_FILE: MSMg01no375_c06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:38 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(99,745,759 - 99,746,077)(72,525,678 - 72,526,146)
sequence
TTCTTTCTCTCATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTTTTTTTTTTGAAATTCCAAAGTTTTCTTTTATTTT
TCATTTTTGAGAGGATCTCACGTCCTCCTCCCCCTACATGCTTTACAGCG
GAAGATGACTTTGACTCTGATCTTCCTGAGTCCACATCCTGAGTGCCAGT
TGTCATTACAAAGCATATACAATTGCACCCGCTTTTGTTTCTCCACTAAC
AAGAGAAAATGGTCCCAATTTCATTCTTCCGAATAGTCCTAATATGTACA
AGGCAATATTGATTTTAATTTTTCACTTCTTCAAGAACGTATGATTTCAC
CAAGTCTACTAGTGAACACACCCATGTAAGTCAACTTCATAAAAGTGAAT
TCTTATTGCTATGATGAAACATCATGGCCCGGCGGCAGTGTTGGTGCACG
CCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCG
AGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCGATACAG
AGAAACCCTGTCTCCGACAAAGATAATGAAACATCCAGGTCTATAGCAAT
TTCGGGAAGGGGCGAAAAAGGGCGCGCTGCTATTTGGTTTATAGGCCCAA
ACCAAGTTAATCACTGAACAAAGTTAGGGCAGAAATTCTGACAAAAAACT
CAAACCATACCTGGCGCCCAAAAAATGGAAAAAAATGCTGCTCCCAAC

CCCCCCATACAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCACAGTCTGCCCC
TTGAAGCAATCCCACACAGTGTCTTGTCTGTGGTCCCTCAATTGTAGAAC
TGCGTCTCCAGGGGCAATTCTACAAAACCACAATGTCCATAGCAGGCTAA
TGGCATGGATAAGCACCAAAGCCTGTGCCTTCAAAGTCAATGAATGATGA
ACCTTTCGATGAAATTTACCTTTATATAGGGGATCACATCCTGTGTTTTA
TAGTGAATGTCACTATGGACTTGAGGTCCAGAAATGGGAACTATTTTACA
GAAGCATAAAATATAAACAGGGCAACAATGTGGAAAAACTGGACAGTCTG
TGTCGATGAGAGCATGAAATTATAAGGCTGCGAGGGAAACTGGAAGGTAA
AATTATCAGATGCTCAGCTTTGAGGTACAAGCTCTGAAGAATCCAGAGAT
GCATCCTATAGAAATAGTTTTCATTCTTATTGTTTATAAATTCCATAAAT
GTATGTAATCAGTTTTGATCACATCTATCCCCTTATTGTAAATTTACCCT
TACCATTTAAGGAATATTTATAAAATCCCGATAAACCCTCTCCACGGTCA
AATCCCCTGGGTGAAAACCTGAATCCCCCTTCTCCCCATAACCCCACTCC
CTGTCCCGTAAAAAATTTTGTCCTTTCCCCCATAATTTCCCTTCATTAAC
TCTCTTTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_c06.b1 MSMg01no375_c06.b1 CHROMAT_FILE:
MSMg01no375_c06.b1 PHD_FILE: MSMg01no375_c06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:38 2005
         (496 letters)



>mm_chr10_99745537_99746432
          Length = 896

 Score =  571 bits (295), Expect = e-167
 Identities = 313/319 (98%)
 Strand = Plus / Minus

                                                                       
Query: 23  aaattccaaagttttcttttatttttcatttttgagaggatctcacgtcctcctccccct 82
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aaattccaaagttttcttttatttttcatttttgagaggatctcacgtcctcctccccct 482

                                                                       
Query: 83  acatgctttacagcggaagatgactttgactctgatcttcctgagtccacatcctgagtg 142
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 481 acatgctttacagcggaagatgactttgactctgatcttcctgactccacatcctgagtg 422

                                                                       
Query: 143 ccagttgtcattacaaagcatatacaattgcacccgcttttgtttctccactaacaagag 202
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 421 ccagttgtcattacaaagcatatacaattgcacccgcttttctttctccactaacaagag 362

                                                                       
Query: 203 aaaatggtcccaatttcattcttccgaatagtcctaatatgtacaaggcaatattgattt 262
           |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 361 aaaatgatcccaatttcattcttccgaatagtcctaatatgtacaagccaatattgactt 302

                                                                       
Query: 263 taatttttcacttcttcaagaacgtatgatttcaccaagtctactagtgaacacacccat 322
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 301 taatttttcacttcttcaagaacatatgatttcaccaagtctactagtgaacacacccat 242

                              
Query: 323 gtaagtcaacttcataaaa 341
           |||||||||||||||||||
Sbjct: 241 gtaagtcaacttcataaaa 223


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no375_c06.g1 MSMg01no375_c06.g1 CHROMAT_FILE:
MSMg01no375_c06.g1 PHD_FILE: MSMg01no375_c06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:38 2005
         (469 letters)



>mm_chr16_72525478_72526346
          Length = 869

 Score =  861 bits (445), Expect = 0.0
 Identities = 463/469 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcacagtctgccccttgaagcaatcccacacagtgtcttgtctgtggtccctcaattgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcacagtctgccccttgaagcaatcccacacagtgtcttgtctgtggtccctcaattgt 260

                                                                       
Query: 61  agaactgcgtctccaggggcaattctacaaaaccacaatgtccatagcaggctaatggca 120
           ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 agaaccgcgtctccaggggcaattctacaaaaccacaatgtccatagcagactaatggca 320

                                                                       
Query: 121 tggataagcaccaaagcctgtgccttcaaagtcaatgaatgatgaacctttcgatgaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 tggataagcaccaaagcctgtgccttcaaagtcaatgaatgatgaaccttttgatgaaat 380

                                                                       
Query: 181 ttacctttatataggggatcacatcctgtgttttatagtgaatgtcactatggacttgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttacctttatataggggatcacatcctgtgttttatagtgaatgtcactatggacttgag 440

                                                                       
Query: 241 gtccagaaatgggaactattttacagaagcataaaatataaacagggcaacaatgtggaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtccagaaatgggaactattttacagaagcataaaatataaacagggcaacaatgtggaa 500

                                                                       
Query: 301 aaactggacagtctgtgtcgatgagagcatgaaattataaggctgcgagggaaactggaa 360
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaactggacagtctgtgtcaatgagagcatgaaattataaggctgcgagggaaactggaa 560

                                                                       
Query: 361 ggtaaaattatcagatgctcagctttgaggtacaagctctgaagaatccagagatgcatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggtaaaattatcagatgctcagctttgaggtacaagctctgaagaatccagagatgcatc 620

                                                            
Query: 421 ctatagaaatagttttcattcttattgtttataaattccataaatgtat 469
           ||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 621 ctaaagaaatagttttcattctcattgtttataaattccataaatgtat 669


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space:   394281
Effective search space used:   394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |