BAC Information

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BAC

Clone NameMSMg01-375F04
Chromosome10 (Build37)
Map Location 115,759,645 - 115,928,408
singlet/doubletdoublet
Overlap genePtprb, Kcnmb4, Cnot2
Upstream geneTmem19, Thap2, Ccdc131, Lgr5, A930009A15Rik, LOC668071, EG668073, Tspan8, Ptprr, 4933416C03Rik
Downstream geneLOC668080, EG668091, Gm239, Rab3ip, D630029K05Rik, LOC544741, Best3, Lrrc10, Cct2, Frs2, Yeats4, 9530003J23Rik, Lyzs, Lyz, Cpsf6, LOC668146
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375F04.T7 (MSMg01no375_f04.b1)MSMg01-375F04.TJ (MSMg01no375_f04.g1)
ACCAG480906AG480907
length768785
length of high quality
(start - end)		379 (55 - 433)410 (82 - 491)
definitionCHROMAT_FILE: MSMg01no375_f04.b1 PHD_FILE: MSMg01no375_f04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:53 2005CHROMAT_FILE: MSMg01no375_f04.g1 PHD_FILE: MSMg01no375_f04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,928,037 - 115,928,408)(115,759,645 - 115,760,054)
sequence
NTTTTTTTTTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCCAACTCCATTTCTCTGAGTGATTGTTAGTATTACAA
AAGTATGAGGCAGCTTTTAAGTAAATTTCAACAGAAGAAAAGTATTTCTA
ACAAATTTCAAAACAAATTTGGGCAGCACATTCGTTGTTGCTTTGGGGCT
ATCTCTTCAGTGTGCTGAGTTGATAGGATGTTTGCATTTTAAGAAGACAG
TAGGAAGTGTTACCAGATAGAAACCATGGGAAGGTTGACCTTCTGGAAGT
TCTTATAAAGCTGAAAGACATGGAGAAAGATGAGCCCAATAGAAAATACA
GAAGAGGGTGACAAGTGGTTTGAGTTTTGGTTTAGGTTTTTGTCTTTAGG
TTTCTCAGTGGTAAATGTGGCTGGTGCTCACCCTTCAGGCTGTAGCTGGC
ATTTCAGCAGCTAGAATTATTCGAAATGCCTTATTTCTAAAGAGTGTATT
CTTCAGTTACCACTTCAAATTGTCTTGTTTGTGAATGATTGTCAACAGTG
ATGAAGTGCACTGTGTTTGTATTACCCTTTTACCCCCGGTTATTGCTCCC
ACAGCGTTCCTGCTTTCCTTCGTCTTTCCCCATTCGCCTATATAATTATC
TCATTTATTTCCCTTTCCTCCCCCTCAACATCGCATTTCTCCTTTTTATA
TACACTACTATCCTTCCCCTACCTTATCGTTCCCACAACCCCTTTTTTAC
TATCCCCATATTCCCCCG

TTTTTTCGATGATAGTGGCGGCGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTTTACAGACCTGATGC
CTGGACGGAATTACAAGGCTACTGTCACTAGCATGAGTGGAGATTTAAAA
CAGTCATCTTCAATCAAAGGAAGAACAGGTAATGGCATTCGCAAATTTTA
CATTTCACAATGGTCTATCCACAGAAATTTGCAAATAGCCACTAAGTGCC
TGCCAAGCCTATCATGTACATTCCAGGACATTATGACCCTTTCTATTGTA
TTTCCTATTTTGCTAAGTTTCTTCTTTTGCTTAGGTGTATTTTACTCATC
GAAATATATTAGAGAGTAACTTTGACATGAAGTTCTACCTGCAAAAGAGA
ACGAAGAGGTGGGACACTATTGAGAACAGGGAGTGAGGTAGAAAGTATTG
TTTTAAATTATTACAAAAGCAGGATATTTTGCGATGATTGTAATTTCCAG
AGGAAAAGGAGATAGTGACATCATCAGGAGACGGGGAAGTGTCCATTCTT
GATGAAGGTGCGACCTATCGCGGTTTGGCAAAAATTGGTTTTAATAAGGC
ATAATTGAATAATCTAACATCCCATTTCTTTTCCTTTTTTTCTCCTACCT
TTTCCCCTTCTCTTCCTTCTACTTTCTCCGACGTATCAAGAACTATTGGC
TACATATCAAATCCCCTGCTCTATTAACAACACAGTATTAGTATAAGTTA
TAAATTATATATTGCTTCACTCCTCTTATTACCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_f04.b1 MSMg01no375_f04.b1 CHROMAT_FILE:
MSMg01no375_f04.b1 PHD_FILE: MSMg01no375_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:53 2005
         (379 letters)



>mm_chr10_115927833_115928611
          Length = 779

 Score =  696 bits (360), Expect = 0.0
 Identities = 369/372 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaactccatttctctgagtgattgttagtattacaaaagtatgaggcagctttt 64
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 gaattgcaactccatttctctgagtgattgttagtattacaaaagtatgaggcagctttt 517

                                                                       
Query: 65  aagtaaatttcaacagaagaaaagtatttctaacaaatttcaaaacaaatttgggcagca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 aagtaaatttcaacagaagaaaagtatttctaacaaatttcaaaacaaatttgggcagca 457

                                                                       
Query: 125 cattcgttgttgctttggggctatctcttcagtgtgctgagttgataggatgtttgcatt 184
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cattcgttgttgctttggggttatctcttcagtgtgctgagttgataggatgtttgcatt 397

                                                                       
Query: 185 ttaagaagacagtaggaagtgttaccagatagaaaccatgggaaggttgaccttctggaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ttaagaagacagtaggaagtgttaccagatagaaaccatgggaaggttgaccttctggaa 337

                                                                       
Query: 245 gttcttataaagctgaaagacatggagaaagatgagcccaatagaaaatacagaagaggg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gttcttataaagctgaaagacatggagaaagatgagcccaatagaaaatacagaagaggg 277

                                                                       
Query: 305 tgacaagtggtttgagttttggtttaggtttttgtctttaggtttctcagtggtaaatgt 364
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tgacaagtggtttgggttttggtttaggtttttgtctttaggtttctcagtggtaaatgt 217

                       
Query: 365 ggctggtgctca 376
           ||||||||||||
Sbjct: 216 ggctggtgctca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no375_f04.g1 MSMg01no375_f04.g1 CHROMAT_FILE:
MSMg01no375_f04.g1 PHD_FILE: MSMg01no375_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:53 2005
         (410 letters)



>mm_chr10_115759445_115760254
          Length = 810

 Score =  746 bits (386), Expect = 0.0
 Identities = 404/410 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttttacagacctgatgcctggacggaattacaaggctactgtcactagcatgagtgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttttacagacctgatgcctggacggaattacaaggctactgtcactagcatgagtgga 260

                                                                       
Query: 61  gatttaaaacagtcatcttcaatcaaaggaagaacaggtaatggcattcgcaaattttac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatttaaaacagtcatcttcaatcaaaggaagaacaggtaatggcattcgcaaattttac 320

                                                                       
Query: 121 atttcacaatggtctatccacagaaatttgcaaatagccactaagtgcctgccaagccta 180
            ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 ctttcacaatggtctatccacagaaatttgcaaagagccactaagtgcctgccaagccta 380

                                                                       
Query: 181 tcatgtacattccaggacattatgaccctttctattgtatttcctattttgctaagtttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcatgtacattccaggacattatgaccctttctattgtatttcctattttgctaagtttc 440

                                                                       
Query: 241 ttcttttgcttaggtgtattttactcatcgaaatatattagagagtaactttgacatgaa 300
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 ttcttttgcttaggtgtattttactcattgaaatatattagagagtaactttgacatgaa 500

                                                                       
Query: 301 gttctacctgcaaaagagaacgaagaggtgggacactattgagaacagggagtgaggtag 360
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttctacctgcaaaagagaatgaagaggtgggacactattgagaacagggagtgaggtag 560

                                                             
Query: 361 aaagtattgttttaaattattacaaaagcaggatattttgcgatgattgt 410
           |||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 561 aaagtattgttttaaattattacaaaagcaggatattttatgatgattgt 610


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space:   321201
Effective search space used:   321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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