BAC Information

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BAC

Clone NameMSMg01-375G12
Chromosome10 (Build37)
Map Location 129,715,851 - 129,716,095
singlet/doubletsinglet
Overlap geneNeurod4
Upstream geneOlfr778-ps1, LOC544749, Olfr780, Olfr781, Olfr782, Olfr783-ps1, Olfr784, EG546488, Olfr786, Olfr787, Olfr788, Olfr789-ps1, Olfr790, Olfr791, Olfr792, GA_x5J8B7W6HFP-3168293-3169194, Olfr794, GA_x5J8B7W6HFP-3198834-3199739, Olfr796, GA_x5J8B7W6HFP-3231749-3230798, Olfr798, Olfr799, Olfr800, Smt3h2-ps3, Olfr801, Olfr802, Olfr803, Olfr804, Olfr805, Olfr806, Olfr807, Olfr808, Olfr809, Olfr810, Olfr811, Olfr812, Olfr813, Olfr814, Olfr815, Olfr816, Olfr1544-ps1, Olfr817-ps1, Olfr818, LOC100043200, Olfr247, LOC100043203, Olfr820, Olfr821, Olfr822, Olfr1542-ps1, Olfr823, LOC382471, Olfr824, LOC672405, Olfr825, Olfr826, Olfr827
Downstream gene5830405N20Rik, EG625068, LOC100043719, EG623734, EG625109, EG625131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375G12.T7 (MSMg01no375_g12.b1)MSMg01-375G12.TJ (MSMg01no375_g12.g1)
ACCAG480967AG480968
length786799
length of high quality
(start - end)
454 (48 - 501)246 (78 - 323)
definitionCHROMAT_FILE: MSMg01no375_g12.b1 PHD_FILE: MSMg01no375_g12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:59 2005CHROMAT_FILE: MSMg01no375_g12.g1 PHD_FILE: MSMg01no375_g12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAATCAACATTTCXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGAATCC
GCGGAATTCTTTGTTCTTCCCTGAGCCCCATTTTTTAATGGGGTTGTTTG
ATTTTCTGGAATCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGT
CCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGG
TCTCTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTT
TCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCT
GTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCC
CACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCTT
TGATCCATTTAGATTTGACCTTANCACAAGGAGATAAGTATGGATCGATT
CGCATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCATTTGTTGAA
AATGCTGTCTTTCTTCCCCTGGATGGTTTTAGTTCCCTTGGTGAAGATCT
AGGGAACATAGGTGGGCGGGTCCATTTCTTGGGTCTTCCCCCCTTATCCC
ACTGGTTCCCCTTGTCTTCCCCCCATATCAAATTCTTGCGGTCTCTTACC
CACATCGGTCCTTTTTCCAATATTTTTCCTCCCGTTTTCGGCGATTTTCC
CCTCACCTTTCTTTTTATTTCCTTATAATTTGCCTCTTTTTCTCTCTACC
TTCCTTTTGTCATTCTCCCCTTATATTCCCCCCTTT
NCCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCTATACCTTTACCTTCATTC
ATTCTGGAAAAGTTTCAGTTGGAAAGTGAGTGAAAAGTATTTACACATGT
ATTTGTGGTAGACTGTCCAGTGTTTTTCCCCTCATAAGCTGATGTTACTT
GATTACCTCTTGCTGCTATGGCTCTAAACACAACAGAAAGAGGTTATACA
GGCTAATGTTTAGAGAAGTTAAGAAACACATAAATGAAATATTTTGCTCA
GAACGTACAACAAAAACAAAAACTTTTTTTAAAACAAAAAAAGAAACATA
AACCAAGGAGTTCACATGTGGCATTGTATGGGAACAGTGAGTAGAATAGT
AACTCTTTCATAGCCAAGCTTTTACATCTACAGCTACAATTTTCTATTGA
TTAGTAACTATCTGCATGCCCCACACATATACACAGAGGGAGAGAGAGAG
AGAGAGAGAGGTAGAGAGAGATAGAGATATACTTTCCTTCTTCCTCCTTT
CCCCTTCTCTTTTTTCTCTTCCACTTTCTATTCTTACTTCTTGTAACATT
ATTCCCCTCTTTTTTTTTTCCCTTCCTTTTTTCTTCCCCTTCTTCCGTTC
TAATAATCTTTCTCTTTTTTTTTCCCACATCTTCTCTCCCTTTTTCATCA
TTTTCTTCCTTTCCTTTTTTTTTCCCCCCGTTCCCTTTTCCTCCCTTATA
TCCTCTTTCCCCCCTTTTATATCCACCTATCATTCTTTACCCTATCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_g12.g1 MSMg01no375_g12.g1 CHROMAT_FILE:
MSMg01no375_g12.g1 PHD_FILE: MSMg01no375_g12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:59 2005
         (246 letters)



>mm_chr10_129715651_129716295
          Length = 645

 Score =  447 bits (231), Expect = e-130
 Identities = 243/247 (98%), Gaps = 3/247 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcctatacctttaccttcattcattctggaaaagtttcagttggaaagtgagtgaaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcctatacctttaccttcattcattctggaaaagtttcagttggaaagtgagtgaaaag 260

                                                                       
Query: 61  tatttacacatgtatttgtggtagactgtccagtgtttttcccctcataagctgatgtta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatttacacatgtatttgtggtagactgtccagtgtttttcccctcataagctgatgtta 320

                                                                       
Query: 121 cttgattacctcttgctgctatggctctaaacacaacagaaaga-ggttatacaggctaa 179
           |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 321 cttgattacctcttgctgctatggctctaaacacaacagaaa-acggttatacaggctaa 379

                                                                       
Query: 180 tgtttagagaagttaagaaacacataaatgaaatattttgctcagaacgtacaacaaaaa 239
           |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 380 tgtttagagaagttaagaaacacataaatgaaatattt-gctcagaacctacaacaaaaa 438

                  
Query: 240 caaaaac 246
           |||||||
Sbjct: 439 caaaaac 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 645
Length adjustment: 9
Effective length of query: 237
Effective length of database: 636
Effective search space:   150732
Effective search space used:   150732
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)