Query= MSMg01no375_j12.b1 MSMg01no375_j12.b1 CHROMAT_FILE:
MSMg01no375_j12.b1 PHD_FILE: MSMg01no375_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:14 2005
(533 letters)
>mm_chr10_107622092_107623024
Length = 933
Score = 814 bits (421), Expect = 0.0
Identities = 451/475 (94%), Gaps = 22/475 (4%)
Strand = Plus / Minus
Query: 80 acactcttgggcttcactaggtaatggttaagagactagtataccctttaaattgctcag 139
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 933 acactcttggacttcactaggtaatggttaagagactagtataccctttaaattgctcag 874
Query: 140 ttagacctcagcatttgtctttaacgtcttctacagcttgaacaaatacccctgggactg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 ttagacctcagcatttgtctttaacgtcttctacagcttgaacaaatacccctgggactg 814
Query: 200 aatgactgttttctgtaacatgaacacccctgtcctaaaacactaccaacagtgattta- 258
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 aatgactgttttctgtaacatgaacacccctgtcctaaaacactaccaacagtgatttac 754
Query: 259 ---------------------ctctaccctttccccccttgttgtcctctaccatactat 297
|||||||||||||||||||||||||||||||||||||||
Sbjct: 753 tcacttgtatctatctgctttctctaccctttccccccttgttgtcctctaccatactat 694
Query: 298 gaacactcaaaatcaagggcccttctttagttgtcattatactgataatgacaactagtt 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 gaacactcaaaatcaagggcccttctttagttgtcattatactgataatgacaactagtt 634
Query: 358 gtctctggagtatattggactttaatcagacactgaataggaggagcctgcaggatgatg 417
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 gtctctggagtctattggactttaatcagacactgaataggaggagcctgcaggatgatg 574
Query: 418 ctgcagctctaccagtagctgtgtaagctggcaatctttgctacttgtaactcaccgtga 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 ctgcagctctaccagtagctgtgtaagctggcaatctttgctacttgtaactcaccgtga 514
Query: 478 tcatggaaattctatttgagtgtgtcatagacttgctatgagagctgggctaatt 532
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tcatggaaattctatttgagtgtgtcatagacttgctatgagagctgggctaatt 459
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space: 482729
Effective search space used: 482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no375_j12.g1 MSMg01no375_j12.g1 CHROMAT_FILE:
MSMg01no375_j12.g1 PHD_FILE: MSMg01no375_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:14 2005
(517 letters)
>mm_chr10_107374407_107375325
Length = 919
Score = 886 bits (458), Expect = 0.0
Identities = 500/520 (96%), Gaps = 15/520 (2%)
Strand = Plus / Plus
Query: 1 atttataaacacaaaattacatgtgaatatctatagaagttatttttttataatagacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atttataaacacaaaattacatgtgaatatctatagaagttatttttttataatagacaa 271
Query: 61 aactgaaagcatcccagaagtcatgatgagagaactgtgtttaaatactgatgtgtgttc 120
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 272 aactgaaagcatcccagaagtcatgatgagaggattgtgtttaaatactgatgtgtgttc 331
Query: 121 ataatgatgacataatcctccttcataaaataataaaataattgatttttctagaacata 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 332 ataatgatgacataatcctcctttataaaataataaaataattgatttttctagaacata 391
Query: 181 caactaaaggtatgctgaataaaataactcaaacaaaaaatgacacgtgatttttttata 240
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 392 caactaaaggtatgctgaataaaataactcaaacaaaaaatgacacgtgatat----ata 447
Query: 241 tagtatattttttatat-tatatatatatatatgcatatatattgcattcttataaaatt 299
|| ||||| |||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 448 ta-tatat-----atatatatatatatatatat--atatatattgcattcttataaaatt 499
Query: 300 ctacaaagtaatctgtagttacatcaagcagatcaacggctaccgagggaggatgaagag 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctacaaagtaatctgtagttacatcaagcagatcaacggctaccgagggaggatgaagag 559
Query: 360 tcactcttttcaaaagaatggcagggagaaatcgcagaggcg--aaaaaaaaacttttgg 417
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 560 tcactcttttcaaaagaatggcagggagaaatcgcagaggcggaaaaaaaaaacttttgg 619
Query: 418 agataataaaagtgtctcttgctttgttgatggttgtaaagttcaatgcatttgttcata 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agataataaaagtgtctcttgctttgttgatggttgtaaagttcaatgcatttgttcata 679
Query: 478 tgttaaaataaccattatgctttcttgcttcttttccata 517
||||||||||||||||||||||||||| ||||||||||||
Sbjct: 680 tgttaaaataaccattatgctttcttgtttcttttccata 719
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 919
Length adjustment: 10
Effective length of query: 507
Effective length of database: 909
Effective search space: 460863
Effective search space used: 460863
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
