BAC Information

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BAC

Clone NameMSMg01-376B02
Chromosome10 (Build37)
Map Location 124,168,748 - 124,169,311
singlet/doubletsinglet
Overlap genenone
Upstream geneAI851790, 4930503E24Rik
Downstream geneLOC671416, Slc16a7, LOC100042987, EG668313, LOC100042992, LOC668317, LOC100042994
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376B02.T7 (MSMg01no376_b02.b1)MSMg01-376B02.TJ (MSMg01no376_b02.g1)
ACCAG481473AG481474
length743740
length of high quality
(start - end)
629 (43 - 671)564 (72 - 635)
definitionCHROMAT_FILE: MSMg01no376_b02.b1 PHD_FILE: MSMg01no376_b02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:52 2005CHROMAT_FILE: MSMg01no376_b02.g1 PHD_FILE: MSMg01no376_b02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATACTAGGTACCATTACCAGGGCAAGCGACTGTGGCTAGACAGGTTAT
AGACATCAGAGGAGAACCTACTACTACTGCTGCTGCTATTACTACTACTA
CTAATGTGCTAAACAGTATTAAACTGATTTCTATGGTCATTCCATTACAG
CTATAGATGGCTGCATGCCACACTTTATCAAAGATGATATTATTTTCAGT
AGATAGAAGTAAAAATAGATATCAACAACTGGTTAGGGTGCAGAGAGTAC
AAGACTGTGGAAGACTCAGGGCTCACTAGGACATGTATATTACCTCCCCC
TCTAGTTGTGCATGTCTCAGGGAGCATCACCAATTGGGGACAGAATTATT
GTAAGAAGCAAGGAGGAATACAGATACAACAAAACAGTATTTCTAGCCAC
AACAGGCAGCTGCATATAGGAATTACATGAACTCACAGTAGCTGTGCCAG
TACTCACAACACTGGCACTGGCTCTAGCCAGACAAATTCCAGTGTAGGAT
GGGAAGGTCGACACAAAGGCACAGTCCTTGCTGAGGAGATGTTAATGGTG
AACTGCTGTGGAAGGATGGTTGGTTTTCTTTTAGGGTGTGGCTCTAGGTA
GGTGGAACATGATGTGATACATAGACATGCACCTAGGAGTTTGTAGCCAG
TATGAATTGGACTGTATGAGTTTTTCTAAAGTGGGCAAAAAAA
ATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACCTTGGACTTGAATACACTGAGCAGCCA
TTACCAATGTTTTCTCATTCTGTGTGTCAAGGGGAACTGAGAGAGGAAGC
ATACACAGCATTATTTATGAAGAGGTATGGAACAGAAGTAAGAAAGATAA
AAAAAAATATGTCACCAAAAAGATTTAAAATACTACAGAATCTACCAAAT
AATTCTAAGGCAACCTGCACAAACACAGTTCTGTAAAACTCTTCCAGACA
TTTCTTTCTGTTAAATCCCTTCAATATGATTACGGGGAACTGTAAAAACT
CCTGACTGCATTTAAGAAAGGGCATCATTCTTTGGTTGGGGCTTTAGTCC
CTGGGAGCGCTGGGTGGTCCGGTTAGTTGATATTGTTCTTCCTATGGAGT
TGCAATCCCCTTCAGCCCCTTTAGTCTTTCTCCTAGCTCTTCCATTGTGA
ATCTGGGATCACTCAGATGGCTGGCTGTGACAATCTGTATTTGTATTGGG
CAGGTGCTGGTAGAACCTCTCAGGGCCTTATCTGACACCATTGGGAGGGG
ACAGAGGCTTGGTGACCCAGCATAGGAGGATGCTAGAGGGCTAANGTGGG
AGTGCGTGAGTGGNTAAAGGAGCACCCTCATCGAGGTAAGGGAAGCAGAA
TGACCGGCGGCGGTTTTTGTNTTTGGCCACCCCTCCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_b02.g1 MSMg01no376_b02.g1 CHROMAT_FILE:
MSMg01no376_b02.g1 PHD_FILE: MSMg01no376_b02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:52 2005
         (564 letters)



>mm_chr10_124168548_124169511
          Length = 964

 Score = 1083 bits (560), Expect = 0.0
 Identities = 563/564 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   accttggacttgaatacactgagcagccattaccaatgttttctcattctgtgtgtcaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 accttggacttgaatacactgagcagccattaccaatgttttctcattccgtgtgtcaag 260

                                                                       
Query: 61  gggaactgagagaggaagcatacacagcattatttatgaagaggtatggaacagaagtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggaactgagagaggaagcatacacagcattatttatgaagaggtatggaacagaagtaa 320

                                                                       
Query: 121 gaaagataaaaaaaaatatgtcaccaaaaagatttaaaatactacagaatctaccaaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaagataaaaaaaaatatgtcaccaaaaagatttaaaatactacagaatctaccaaata 380

                                                                       
Query: 181 attctaaggcaacctgcacaaacacagttctgtaaaactcttccagacatttctttctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attctaaggcaacctgcacaaacacagttctgtaaaactcttccagacatttctttctgt 440

                                                                       
Query: 241 taaatcccttcaatatgattacggggaactgtaaaaactcctgactgcatttaagaaagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaatcccttcaatatgattacggggaactgtaaaaactcctgactgcatttaagaaagg 500

                                                                       
Query: 301 gcatcattctttggttggggctttagtccctgggagcgctgggtggtccggttagttgat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcatcattctttggttggggctttagtccctgggagcgctgggtggtccggttagttgat 560

                                                                       
Query: 361 attgttcttcctatggagttgcaatccccttcagcccctttagtctttctcctagctctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attgttcttcctatggagttgcaatccccttcagcccctttagtctttctcctagctctt 620

                                                                       
Query: 421 ccattgtgaatctgggatcactcagatggctggctgtgacaatctgtatttgtattgggc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccattgtgaatctgggatcactcagatggctggctgtgacaatctgtatttgtattgggc 680

                                                                       
Query: 481 aggtgctggtagaacctctcagggccttatctgacaccattgggaggggacagaggcttg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aggtgctggtagaacctctcagggccttatctgacaccattgggaggggacagaggcttg 740

                                   
Query: 541 gtgacccagcataggaggatgcta 564
           ||||||||||||||||||||||||
Sbjct: 741 gtgacccagcataggaggatgcta 764


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)