BAC Information

Click to search

BAC

Clone NameMSMg01-376G19
Chromosome10 (Build37)
Map Location 21,237,347 - 21,237,742
singlet/doubletsinglet
Overlap genenone
Upstream genePde7b, LOC667202, Ahi1, Myb, LOC100039870, Hbs1l, Aldh8a1, LOC100039906
Downstream gene1700020N01Rik, EG432436, LOC100039936, LOC628133, Sgk, LOC667254, LOC665523, 4930444G20Rik, LOC100039992, E030030I06Rik, LOC665543, Ube2q2l, Raet1e, LOC100040023, LOC100038830, LOC667280, EG667281, LOC432438, Raet1d, LOC667299, LOC667303, LOC100040072
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376G19.T7 (MSMg01no376_g19.b1)MSMg01-376G19.TJ (MSMg01no376_g19.g1)
ACCAG481744AG481745
length829755
length of high quality
(start - end)		275 (46 - 320)396 (73 - 468)
definitionCHROMAT_FILE: MSMg01no376_g19.b1 PHD_FILE: MSMg01no376_g19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:19 2005CHROMAT_FILE: MSMg01no376_g19.g1 PHD_FILE: MSMg01no376_g19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTCTCCTACGACTCCCTTTCCTTTGTATTTTGGGTAGGTGGGGC
CACAAGTGTGAATCTTGGGCAAGAGCTGGAGGCAGAAGCAAGCTGCAGTT
ACTTTAGAGCTTCGAATGCTGCCCTTTCACTGCTTGGCCATTTCTTGCAT
GAGGTGGCAGCTAGGCCTGCAACAACCTACCATCCTCTGGATGGTCCTCT
GTAAGCTTATAGAACTCTCCAGCCAGGTCTGAGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGNGTTTTTTTTTTTTTNNTTNTTTNNTTTTNNTT
TTTTTTTTTTTTTTTTTTTTNTNNNTTNTTTTTNTTTTGTGTTTTTNTTN
TTTTTNTTTTTTTTTTNNTNNNNNTTTTTTTTTTTTTTTTNTTNTTNTTT
TTTTTTTTTTTTTTTTTTTTTTTTGGTGTNTTTTTTTTTTTTTGTTTTTT
TGTTGTTTGTTTTGTTNTTTGTTTGTTTGTGGTTTTTGTGGTTGTTTGTT
TTTTTGTTGTTTTTGTTGGTTTTTTTGTGTGTTTTGTTTGTTTTNTTGTT
TTTTTGTGTTGTTTTGTTTTTTTTTGTTTGTTGTTTGGTTNGTTTTTGTT
TNTTTTTTGTTTGGTTGTTTTGGTGTTTTGTTGTTTTTTTTTTNGTTGTT
GTGTGGTTGGTTTTGTGTTTTTTTGTGTGTGTTTGTTTTTGTTTTTTGTT
TGTTTGTTTGTGTNGTTTGTTGTGTTTGGTGTTTTTTTGGNTTTTGTGTG
TTGTTTTTTTTTGTTTTTTTGTTTTTTTG

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGTGCAAGAGCTTCAGTTTGTTCTGAAC
CTCACGGGGAAATTAAAATAATTTATCTTGTCAATCTCAATGTGTTGAAA
CACGAATCTTCTCAGAGAGGGCTCAAACTGGCGTCATGGGTATGGGCGTG
TATATTGCCTACACCATGAGATTTAGGGCTCCCTTTAATCAGCATCAGGG
GTAAGACACAGATGGGGGTGATTTTGAATAGGGTTTTTAAGCATTTCAGA
AACTCCTGAGCAGGTTAGGTTCCTTCAGAGGATGGTGGTCGGATCAAAAG
ACAGGCCTGTTTCACTCACGGACCAGAAAAGCTCCCTGTAGGGAGGGGCC
CTGGGGCTTTTTTCTAGGTCAGAATGCTGAGTAAGAGGTTTGAATCTCAA
GGTTGATCAGCCTTGGGTAAGGCGGGCCCTATACAGTGTTCCAGGCTTGA
GTTAAAGGTTGCTGTCCTTTTGAATACACCGGGGTAGCCTCTCCCTGTAT
GGCAATTTGCCCCCCTTCAAATTTACTTTGGGCCCCGTGGTCTATAAAAT
TGTAATTCAAGGTTAAATTTCCATCCTATCCCGTTTTATTGTCCCTCTTT
AGGGGAAATCCTCCATCTCATTCATTTTAATTCCTGATCGTGTCTTATTC
CTCATTATCCTCTTTCTATTCCCCCACTTGATTTTACTCGCGGCCACCTT
TTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_g19.g1 MSMg01no376_g19.g1 CHROMAT_FILE:
MSMg01no376_g19.g1 PHD_FILE: MSMg01no376_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:19 2005
         (396 letters)



>mm_chr10_21237147_21237942
          Length = 796

 Score =  735 bits (380), Expect = 0.0
 Identities = 392/396 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgcaagagcttcagtttgttctgaacctcacggggaaattaaaataatttatcttgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgcaagagcttcagtttgttctgaacctcacggggaaattaaaataatttatcttgtc 260

                                                                       
Query: 61  aatctcaatgtgttgaaacacgaatcttctcagagagggctcaaactggcgtcatgggta 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| 
Sbjct: 261 aatctcaatgtgttgaaacacgaatcttctcagagagggctcaaactggcttcatgggtg 320

                                                                       
Query: 121 tgggcgtgtatattgcctacaccatgagatttagggctccctttaatcagcatcaggggt 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgggcgtgtatattgcctacaccgtgagatttagggctccctttaatcagcatcaggggt 380

                                                                       
Query: 181 aagacacagatgggggtgattttgaatagggtttttaagcatttcagaaactcctgagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagacacagatgggggtgattttgaatagggtttttaagcatttcagaaactcctgagca 440

                                                                       
Query: 241 ggttaggttccttcagaggatggtggtcggatcaaaagacaggcctgtttcactcacgga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggttaggttccttcagaggatggtggtcggatcaaaagacaggcctgtttcactcacgga 500

                                                                       
Query: 301 ccagaaaagctccctgtagggaggggccctggggcttttttctaggtcagaatgctgagt 360
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 501 ccagaaaagctccctgtagggaggggccctggagcttttttctaggtcagaatgctgagt 560

                                               
Query: 361 aagaggtttgaatctcaaggttgatcagccttgggt 396
           ||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagaggtttgaatctcaaggttgatcagccttgggt 596


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 796
Length adjustment: 9
Effective length of query: 387
Effective length of database: 787
Effective search space:   304569
Effective search space used:   304569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |