BAC Information

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BAC

Clone NameMSMg01-377M18
Chromosome10 (Build37)
Map Location 71,885,624 - 72,029,413
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039860, LOC216081, EG216082, LOC622812, EG327767, 1700049L16Rik, LOC100040505
Downstream geneZwint, LOC432471, LOC544705, LOC100039981
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377M18.T7 (MSMg01no377_m18.b1)MSMg01-377M18.TJ (MSMg01no377_m18.g1)
ACCAG482794AG482795
length815782
length of high quality
(start - end)		454 (48 - 501)422 (74 - 495)
definitionCHROMAT_FILE: MSMg01no377_m18.b1 PHD_FILE: MSMg01no377_m18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:06 2005CHROMAT_FILE: MSMg01no377_m18.g1 PHD_FILE: MSMg01no377_m18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,028,964 - 72,029,413)(71,885,624 - 71,886,045)
sequence
NTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCTGCATTGACTAGTCAGAGATTGTGTCAACTGGTTCCTTGTT
TACAAAGATCTTCAAAATCTTCCCGATATGTCAACCGCATTGCCAGTGGA
TTCAGGGTTGACAGTTTCTCGGCTTCCTAAAGTATTGCAAAGTACAGGAA
GATGAAGAAAGTACAAGCAAGCTGTCATTGTGACAGGTCCTTAGCATAAC
ACAGGCTCTGTGGAAAGGCTGATTTGTCTAGGATATTTGCTAACAGGAGT
CTTAGTCTGGAGAAATTTCTCTATAGCAAAATACCCTGCACAGTAAGCAT
AGCATCTAAGAGCTATGGCTCTCGAAATGGATGGCTCTCGAGCCACTTGG
TGTGTTCAGTGTACTGACCCATAGGATTACTTCCATAGCTTGACCTTAGA
GCCATTCGGTGTCCTTAGGATGGAAACAAGTCTCCTACTTATGATATATA
AGTATGTGCCACTTATAGGGTGGCAGAGTAGTTCACACAGTTCAGATTAT
GACTTAAAAAAAACACCACACGGGAATCTCCCAGTTTTTTCCAGAACCCC
CCCTTGATCACATGGAACATGGGCTCCCAAAACCACCCTAAAGCCTTGGT
TCCTTGCTTTCTCTATATACCCCCCTTTATTACATGTTTGCCAACCTATT
ACCCTCCATTCTTGTGGTTCTCGGCGTTCCCCCTCTTCCCCCAACTTGTT
GACTCAATCTATTACCTGCGCCCCTTCCATTTCTTCTCTCTTTATTCCTT
CCCCCCTCCCCACCG

CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATGAGACTCAGTATGTAAACAAGCTAG
ATAGAGCTGGGAAATCAGAAACTTAGATGATTTATTCAGTATCATTCTCC
AGGGTTATAAAAACAAAACAGTTCTGTTGGCCCCACTCTGCCAACCCCTC
TGCTGATAGATCCCCAGCCTGTTAAGAAACCTGCAGGCTGTGTATAGAAC
TCCAGGGTTAGCTTTAAGTGTGGTGAGGTAGGCTCTTCAGTGATGTAGAT
GCTTTGGGACCATCCTTGTTTCTGTAAGTAACCCCAATACAAGCTCACTG
GTGTGCCAAGATGGACTCTGATGCAGCCATTACTTTGGTCTGTCATGGCC
TCCCTGTCTGAACTGGGGAAACATGTGTGTTCTGTTTTCCCAGGAAAAGT
CTCTTGTACAACTGTTGTCTCCTAATGAANGGTGCTTTCTAAGGAGTGAC
CTGCTGTGTTTTGCCGTTTTCCCTGCTGTTGTTGTTGTTCGACCGCCCAC
CCTTTTATCCCACCCACTCTATTATTTTTTTTTTATTGACACCCCCCCCA
TCCACCTCTAATCAATTTTTCATTTTTTTTACCTATTTTTCATTTACTTT
CTCCACCCCCACCCTTTTTTTCCCATACATTTATTTTTTCCCAAATTTAT
TTCCCTTCCTTTTACCCTTTTTTTTCTTCTGTTCTATCCCCCATTTCCTT
CTCCTTTATATTATATATTCCTCCCCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_m18.b1 MSMg01no377_m18.b1 CHROMAT_FILE:
MSMg01no377_m18.b1 PHD_FILE: MSMg01no377_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:06 2005
         (454 letters)



>mm_chr10_72028760_72029613
          Length = 854

 Score =  870 bits (450), Expect = 0.0
 Identities = 450/450 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctgcattgactagtcagagattgtgtcaactggttccttgtttacaaagatct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 gaattctctgcattgactagtcagagattgtgtcaactggttccttgtttacaaagatct 595

                                                                       
Query: 65  tcaaaatcttcccgatatgtcaaccgcattgccagtggattcagggttgacagtttctcg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 tcaaaatcttcccgatatgtcaaccgcattgccagtggattcagggttgacagtttctcg 535

                                                                       
Query: 125 gcttcctaaagtattgcaaagtacaggaagatgaagaaagtacaagcaagctgtcattgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 gcttcctaaagtattgcaaagtacaggaagatgaagaaagtacaagcaagctgtcattgt 475

                                                                       
Query: 185 gacaggtccttagcataacacaggctctgtggaaaggctgatttgtctaggatatttgct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 gacaggtccttagcataacacaggctctgtggaaaggctgatttgtctaggatatttgct 415

                                                                       
Query: 245 aacaggagtcttagtctggagaaatttctctatagcaaaataccctgcacagtaagcata 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 aacaggagtcttagtctggagaaatttctctatagcaaaataccctgcacagtaagcata 355

                                                                       
Query: 305 gcatctaagagctatggctctcgaaatggatggctctcgagccacttggtgtgttcagtg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gcatctaagagctatggctctcgaaatggatggctctcgagccacttggtgtgttcagtg 295

                                                                       
Query: 365 tactgacccataggattacttccatagcttgaccttagagccattcggtgtccttaggat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 tactgacccataggattacttccatagcttgaccttagagccattcggtgtccttaggat 235

                                         
Query: 425 ggaaacaagtctcctacttatgatatataa 454
           ||||||||||||||||||||||||||||||
Sbjct: 234 ggaaacaagtctcctacttatgatatataa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no377_m18.g1 MSMg01no377_m18.g1 CHROMAT_FILE:
MSMg01no377_m18.g1 PHD_FILE: MSMg01no377_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:07 2005
         (422 letters)



>mm_chr10_71885424_71886245
          Length = 822

 Score =  795 bits (411), Expect = 0.0
 Identities = 419/422 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgagactcagtatgtaaacaagctagatagagctgggaaatcagaaacttagatgattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgagactcagtatgtaaacaagctagatagagctgggaaatcagaaacttagatgattt 260

                                                                       
Query: 61  attcagtatcattctccagggttataaaaacaaaacagttctgttggccccactctgcca 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attcagtagcattctccagggttataaaaacaaaacagttctgttggccccactctgcca 320

                                                                       
Query: 121 acccctctgctgatagatccccagcctgttaagaaacctgcaggctgtgtatagaactcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acccctctgctgatagatccccagcctgttaagaaacctgcaggctgtgtatagaactcc 380

                                                                       
Query: 181 agggttagctttaagtgtggtgaggtaggctcttcagtgatgtagatgctttgggaccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agggttagctttaagtgtggtgaggtaggctcttcagtgatgtagatgctttgggaccat 440

                                                                       
Query: 241 ccttgtttctgtaagtaaccccaatacaagctcactggtgtgccaagatggactctgatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccttgtttctgtaagtaaccccaatacaagctcactggtgtgccaagatggactctgatg 500

                                                                       
Query: 301 cagccattactttggtctgtcatggcctccctgtctgaactggggaaacatgtgtgttct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagccattactttggtctgtcatggcctccctgtctgaactggggaaacatgtgtgttct 560

                                                                       
Query: 361 gttttcccaggaaaagtctcttgtacaactgttgtctcctaatgaanggtgctttctaag 420
           |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 561 gtttccccaggaaaagtctcttgtacaactgttgtctcctaatgaagggtgctttctaag 620

             
Query: 421 ga 422
           ||
Sbjct: 621 ga 622


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space:   335769
Effective search space used:   335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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