BAC Information

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BAC

Clone NameMSMg01-378C24
Chromosome10 (Build37)
Map Location 120,419,036 - 120,419,512
singlet/doubletsinglet
Overlap genenone
Upstream geneGrip1, Helb, Irak3, Tmbim4, 1190005P17Rik, Hmga2, LOC100042902, Msrb3, LOC100043488, Lemd3
Downstream geneWif1, LOC100042911, 4930505D03Rik, LOC100043498, Gns, Rassf3, LOC100043500, Tbk1, Xpot, D930020B18Rik, BC048403, Srgap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378C24.T7 (MSMg01no378_c24.b1)MSMg01-378C24.TJ (MSMg01no378_c24.g1)
ACCAG483094AG483095
length770783
length of high quality
(start - end)
576 (49 - 624)490 (77 - 566)
definitionCHROMAT_FILE: MSMg01no378_c24.b1 PHD_FILE: MSMg01no378_c24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:37 2005CHROMAT_FILE: MSMg01no378_c24.g1 PHD_FILE: MSMg01no378_c24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGAGATCTGCCTGCCTCTGTTAAACATAGACATAGATAGTAA
GCTAGCTGGGTGGGAGCCCATCCTGAAATTACCATTTCTACCACACCTGG
GTCTAAATTAACTCTGTCCATGGCTGGCCCTGATCTCAGGAATCTGTCTG
CCTTTGTAAGCATAAACAAAATATTTAGCCACTCCCTATATCTCTCTGTC
TCCTTCCTTAGCATCTTTCTGACAAGCTGGCTCACAGTGTAGCTGCTCTT
GTTGCTTTAGATTCATGAAGCCCAATTCATATTGCAATTCTTATACTTTG
AGAAAAAAATATATATACAAACTCATATTTTTAGAGTTCTTTTCCACAGC
CTTAAGGGCTGTCCTGAAGAGCCCAGCATTTACCATTTGCTGAGATAGTT
GTTAAGTCGGCCTCCCCGAATCACGCTGTCTCTGATTATCATGGAGTCGT
TAAGATCAACCGGGAAGGCATTCCTTGAAGGAGGAACGTAAAATATGTAC
ATAATTATACAAACAAGCCTTACACTCACAGCAGCTGTGACACGTTTGGA
GACCCATGACCCATTCTTTCCTGTCCTAGGGGCAGGAGCCATGTCATTCC
ACCCCAANCAAGGNCATTGCTGGACACCGCAGATTAGGTGGGCATAAGAC
ATGAACAGGACTAGNCAGATGGCTCAATGGGTTATGGGCCCTGCTTCTAA
ACTGGAACCCTGAGTTGAAC
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATCTAACAACAAACAAACTACTG
CTTCACAGACTGAAGTAGAATTTGCCTGAGATATTAATCGTGTTAGGAAT
TAATGAAGACCAAAGGCTTTAGCAACTACAGTTCTTGGTCATTTCAATAC
TTCGGGTTTTGAATGAACTAGGAACTAAAGGTCTCAAGTCTCAAAGTTAT
AAACCCAAGAGCAAATCTTAAGCTCTCAGAATCTCAATTTATTCTTTTAA
AGTCTTAACAATATTCTCTTCTCTACTTGGCAAGTAACTAATATTTAAGA
ATTTTATGAGAATGATGAATAATACATAAGAGTATGTGAAAATAGCATCC
AAGTACAGAATACACGTTACTGCCACACATCAATAAACTATGACTATTAT
ACCAATATGAAGATTTTTATTAAATTACAAGAAGTTTTGAAGACATGATC
TCATTTGGTCTATAAAACAACAACAAACCCTTTCTTTGANGATGCTGAGG
GTATGACTTACCATANGGAACTATAAGTTGTAACTCCCCTGGGTCTTAGT
GTTTAACCAGACAGGAACCTCGCTTTCCTCAGAGAACCTCCCCCGCCTCA
AACCAAGAGTTGTTGGGTTGTGCCCTGGACCCTTATTTGTCAGGAAAACT
TACGCCCGCTTCTTTACCGGTTGGAGTTTTAAGGTTGGAGCTGTTCCTTA
ATTGTTTCTCAAACTTTTACGGGAAAATTACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_c24.g1 MSMg01no378_c24.g1 CHROMAT_FILE:
MSMg01no378_c24.g1 PHD_FILE: MSMg01no378_c24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:37 2005
         (490 letters)



>mm_chr10_120418824_120419713
          Length = 890

 Score =  862 bits (446), Expect = 0.0
 Identities = 469/477 (98%)
 Strand = Plus / Plus

                                                                       
Query: 13  aacaaactactgcttcacagactgaagtagaatttgcctgagatattaatcgtgttagga 72
           |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 213 aacaaactactgcttcactgactgaagtagaatttgcctgagatattaatcatgttagga 272

                                                                       
Query: 73  attaatgaagaccaaaggctttagcaactacagttcttggtcatttcaatacttcgggtt 132
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 attaatgaagaccaaaggctttagcaactacagttcttggtcatttcaatacttcgggtt 332

                                                                       
Query: 133 ttgaatgaactaggaactaaaggtctcaagtctcaaagttataaacccaagagcaaatct 192
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 333 ttgaatgaactaggaactaaaggtctcaagtctcaaagttatgaacccaagagcaaatct 392

                                                                       
Query: 193 taagctctcagaatctcaatttattcttttaaagtcttaacaatattctcttctctactt 252
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 taggctctcagaatctcaatttattcttttaaagtcttaacaatattctcttctctactt 452

                                                                       
Query: 253 ggcaagtaactaatatttaagaattttatgagaatgatgaataatacataagagtatgtg 312
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ggcaagtaactaatatttaagaattttatgagaatgatgaataatacataagagtatgtg 512

                                                                       
Query: 313 aaaatagcatccaagtacagaatacacgttactgccacacatcaataaactatgactatt 372
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 513 aaaatagcatccaagtacagaatacacgttactgccacacatcaataaactatgacaatt 572

                                                                       
Query: 373 ataccaatatgaagatttttattaaattacaagaagttttgaagacatgatctcatttgg 432
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 ataccaatatgaagatttttattaaattacaagaagttttgaagacatgatctcatttgg 632

                                                                    
Query: 433 tctataaaacaacaacaaaccctttctttgangatgctgagggtatgacttaccata 489
           | ||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 633 tttataaaacaacaacaaaccctttctttgaggacgctgagggtatgacttaccata 689


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)