BAC Information

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BAC

Clone NameMSMg01-378F05
Chromosome10 (Build37)
Map Location 127,609,224 - 127,807,394
singlet/doubletdoublet
Overlap geneRbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a, Usp52, Tmem4, Cs, Coq10a
Upstream geneB4galnt1, LOC100043035, C78409, D10Ertd610e, Dtx3, Pip5k2c, Kif5a, Dctn2, Mbd6, LOC100043045, Ddit3, Mars, LOC622075, Arhgap9, Gli1, Inhbe, Inhbc, R3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085
Downstream geneAnkrd52, Slc39a5, Obfc2b, Rnf41, Smarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2, Si, Dgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763, EG622733, EG546487, Olfr765, Olfr768, Olfr769, Olfr770, Olfr771, Olfr772, Olfr773-ps1, LOC624925, Olfr774, Olfr1518, Olfr776, Olfr777, Olfr778-ps1, LOC544749, Olfr780, Olfr781, Olfr782
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378F05.T7 (MSMg01no378_f05.b1)MSMg01-378F05.TJ (MSMg01no378_f05.g1)
ACCAG483198AG483199
length764786
length of high quality
(start - end)		506 (71 - 576)448 (79 - 526)
definitionCHROMAT_FILE: MSMg01no378_f05.b1 PHD_FILE: MSMg01no378_f05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:47 2005CHROMAT_FILE: MSMg01no378_f05.g1 PHD_FILE: MSMg01no378_f05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,609,224 - 127,609,729)(127,806,947 - 127,807,394)
sequence
NCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGC
GGAATTCTACCAAATTACCTACAACCTAGCCCAACCCTTATATTTTTTTG
TTTTTTGTTTTTGTTTTTTGTGTTTTCTTTTTTCTTTGTTTGAGGAAGGG
CCCTCATGCAAGTTAACTCAAACTATGTAGCTTAGGGTGACCTTGAACTC
CTAATCTTCCTACCTCTACCTCCCCAGAGGTGGTTCAATAGAACACTGGG
CTGCAGGGCCACTCGGCCTCCCCCACCCCACCCCCCAAGCTTTTTGTATT
ACACTGATCCATACTGTATAACCCTGGCTAGCCTGGGATTTGTAGCAATC
TTCCTGCCTCTGCCTCCCAAGTGCTGAGATCACTGGCTTGTGTGCCGCCA
CCACACCTACATTAACACTGTCACAACAGGAAGAAACACCTGAAAGAACA
TGCACAGCAAATTAATGTCACTCATTTCCCTCCAGGAGTCGGATTTGAGT
GGGAAACTACAGGGCTTTGACAGATTTTTTTCTTTTTAATTTTACAGTGT
ACATTTTAGATTTATCACTAAAAATTAGCAAAAGATCCTTTTGGTGTTTC
AAGACAGGGTTTCCCTGACTGTCCTTAAATTCACTCTGTAAACCGTGTGG
CCTGTAACTCAGAGACCCTCCTATCTGCGTCTTGCCTCCCTTATCCCGGG
TATAAAGGAGTAAAATAATTTGCCCCGCTCGCTTGGTTGTTTTCCCTTGA
AAAAAGTTCCCCCT

TTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGCAAACTGGGTGGCAAGCA
CCCCTACCCACTGAGCCATCTGGCTAGCCTCGTCTTGACTCTGAGTCTAT
GACCTTATTTGTGTAAAGCATTTGACTTGTATCACAATGTAGCTTTGATT
GCCTGTCTTCTTCCTGCCAGCACATTTCCTTTGTCAGGCAAAGCTCGAAT
CAATGTGGGGAGCTTTAACCCAGCGTAGGGAAAGCAGAGCTTGCTCTGTG
ACAGTCGGGAGAATTTTGCTTGCTCTTGCACCCGTCTAGGCTAATCTCTT
TCTAATTTGTAGTTTATTTCTCTTCTCTCTTTTTCCTTTGGTCATACTTT
TCCCAAGAGCGCTTGTTTTTTCCTTGAATCCTGGGACGTAGTATTCACCT
TTGGGCTTTCTGCCTGTGATGTCTCGTCCTCCATTGAGTACACATTTTTC
CCCGACAGTGATGGTGCTTTTTTCTAAAAGTAAATTTTGGCTAGCAGTAG
CTCACACCTGCAATTCCAGCCACTGTTCATTGGCACCAAGAAAGTGCATA
TGGAGTTCAATGTCTATCGCCCGTTATCTCATTTATATATTTGCTCCCCC
CATCCCCCCCCGGAGACCATTATTGCCTCTGTACCCCTTTCTTTTTAATA
TCCTTTTAAATCTCCCACACTTTCCCTCCTAACTCACCTTTCCTATCCGA
TCGTCCTCCCCCTTTATAATTATTACCTCCTATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_f05.b1 MSMg01no378_f05.b1 CHROMAT_FILE:
MSMg01no378_f05.b1 PHD_FILE: MSMg01no378_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:47 2005
         (506 letters)



>mm_chr10_127609024_127609929
          Length = 906

 Score =  940 bits (486), Expect = 0.0
 Identities = 501/506 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaacctagcccaacccttatatttttttgttttttgtttttgttttttgtgttttcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaacctagcccaacccttatatttttttgttttttgtttttgttttttgtgttttcttt 260

                                                                       
Query: 61  tttctttgtttgaggaagggccctcatgcaagttaactcaaactatgtagcttagggtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttctttgtttgaggaagggccctcatgcaagttaactcaaactatgtagcttagggtga 320

                                                                       
Query: 121 ccttgaactcctaatcttcctacctctacctccccagaggtggttcaatagaacactggg 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 ccttgaactcctaatcttcctacctctacctccccagagttggttcaatagaacactggg 380

                                                                       
Query: 181 ctgcagggccactcggcctcccccaccccaccccccaagctttttgtattacactgatcc 240
            | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 ttacagggccactcggcctcccccaccccaccccccaggctttttgtattacactgatcc 440

                                                                       
Query: 241 atactgtataaccctggctagcctgggatttgtagcaatcttcctgcctctgcctcccaa 300
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acactgtataaccctggctagcctgggatttgtagcaatcttcctgcctctgcctcccaa 500

                                                                       
Query: 301 gtgctgagatcactggcttgtgtgccgccaccacacctacattaacactgtcacaacagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgctgagatcactggcttgtgtgccgccaccacacctacattaacactgtcacaacagg 560

                                                                       
Query: 361 aagaaacacctgaaagaacatgcacagcaaattaatgtcactcatttccctccaggagtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagaaacacctgaaagaacatgcacagcaaattaatgtcactcatttccctccaggagtc 620

                                                                       
Query: 421 ggatttgagtgggaaactacagggctttgacagatttttttctttttaattttacagtgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggatttgagtgggaaactacagggctttgacagatttttttctttttaattttacagtgt 680

                                     
Query: 481 acattttagatttatcactaaaaatt 506
           ||||||||||||||||||||||||||
Sbjct: 681 acattttagatttatcactaaaaatt 706


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no378_f05.g1 MSMg01no378_f05.g1 CHROMAT_FILE:
MSMg01no378_f05.g1 PHD_FILE: MSMg01no378_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:47 2005
         (448 letters)



>mm_chr10_127806693_127807540
          Length = 848

 Score =  866 bits (448), Expect = 0.0
 Identities = 448/448 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagcaaactgggtggcaagcacccctacccactgagccatctggctagcctcgtcttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 agagcaaactgggtggcaagcacccctacccactgagccatctggctagcctcgtcttga 643

                                                                       
Query: 61  ctctgagtctatgaccttatttgtgtaaagcatttgacttgtatcacaatgtagctttga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 ctctgagtctatgaccttatttgtgtaaagcatttgacttgtatcacaatgtagctttga 583

                                                                       
Query: 121 ttgcctgtcttcttcctgccagcacatttcctttgtcaggcaaagctcgaatcaatgtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 ttgcctgtcttcttcctgccagcacatttcctttgtcaggcaaagctcgaatcaatgtgg 523

                                                                       
Query: 181 ggagctttaacccagcgtagggaaagcagagcttgctctgtgacagtcgggagaattttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 ggagctttaacccagcgtagggaaagcagagcttgctctgtgacagtcgggagaattttg 463

                                                                       
Query: 241 cttgctcttgcacccgtctaggctaatctctttctaatttgtagtttatttctcttctct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 cttgctcttgcacccgtctaggctaatctctttctaatttgtagtttatttctcttctct 403

                                                                       
Query: 301 ctttttcctttggtcatacttttcccaagagcgcttgttttttccttgaatcctgggacg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 ctttttcctttggtcatacttttcccaagagcgcttgttttttccttgaatcctgggacg 343

                                                                       
Query: 361 tagtattcacctttgggctttctgcctgtgatgtctcgtcctccattgagtacacatttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tagtattcacctttgggctttctgcctgtgatgtctcgtcctccattgagtacacatttt 283

                                       
Query: 421 tccccgacagtgatggtgcttttttcta 448
           ||||||||||||||||||||||||||||
Sbjct: 282 tccccgacagtgatggtgcttttttcta 255


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space:   367044
Effective search space used:   367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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