BAC Information

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BAC

Clone NameMSMg01-378K04
Chromosome10 (Build37)
Map Location 61,275,009 - 61,275,381
singlet/doubletsinglet
Overlap genenone
Upstream geneUnc5b, Pcbd1, Sgpl1, 1700021K02Rik, Adamts14, Prf1, EG237361, X99384, Nodal, Eif4ebp2, D830039M14Rik, Lrrc20, Npffr1, Ppa1, Sar1a, Tysnd1, Aifm2, H2afy2, LOC100039284
Downstream geneCol13a1, EG436164, EG432466, 2010107G23Rik, Neurog3, Tspan15, Tacr2, Hk1, 2210417K05Rik, Hkdc1, Supv3l1, Vps26a, Srgn, 2510003E04Rik, Ddx21, Ddx50, Stox1, Ccar1, Cxxc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378K04.T7 (MSMg01no378_k04.b1)MSMg01-378K04.TJ (MSMg01no378_k04.g1)
ACCAG483436AG483437
length755773
length of high quality
(start - end)
437 (51 - 487)248 (79 - 326)
definitionCHROMAT_FILE: MSMg01no378_k04.b1 PHD_FILE: MSMg01no378_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:10 2005CHROMAT_FILE: MSMg01no378_k04.g1 PHD_FILE: MSMg01no378_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTGTTCTAATGACCATGGAGTTATGAGGACTGAAGTCAGTA
AGACACTAGGCCATTACATAAAGCAGGGGGCAGAGAACACTTGTCCCTAG
ACACCGGACATCCAGCTTCAAAGAGCAGTGACCACTGAGAGAGGTAATCC
TGGAGGTGGACTCTGGAATGCACCCAGCTTAACCTGTAGAGAATTTCCCA
ACCAGACTGAGAGGCTGGTCAGAGAAGGGGGGCCCTGACAGTCTCCCCGA
GTTGAGGAGACAAACTCGGGATCAGGCTACTTGTGTTCGTGACGGGTGCA
CAGAGAAGGCACCTCCGAGACACTCACTCATCAGTGCAGGTATGGACGGA
AATTGCCAGAAAACTGGGAATGAACCACCCCCAGGGGGCAAGGCGAACAT
TTCTAAGAGCCCACACAGAACCAGGAAAGCCTGTGGCCTCATGCGCCACA
GGAAGAGAGCTACCAGGGGGAGGAGGATTCTGGGATTCAAGTTATGAGGC
CAAATCGGCTCTAGAGCCAAAACTGCTCAGCCCCTACCCAGCAATGCTTA
AACCTCATGCCTCTTGATGCCTCATCAGTTTCCAATCCCCTTGCCTTCCT
GAAAGAACACCGACAATACCTTCTCGATAGTGGTGTTGCATATGTGCAAA
CCTCCTGGTATCATGTTATAAATCTCAGCTATGCTTCCACACTTTACATA
CACTC
CCCCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCACAGCCATGCCCAAGTGAAGA
AGGGAGGGAGGACCTCTTCCCGCATGGCTCCCACAGAAGCAAGAAAACCT
TTCCCAGAAGGCTCTCTCACAACTTCCCTTACATCACTATGAGTCACACG
ACCACAACCAAACCAGACATTAGCAAGAGGAGCAGAGTCATTGCGATTAA
AGTAGACTAATCAGGACCCTCCTCTGGGGTTGGCAGCGAGGCCCATGAAG
CACAAGGATGCACAGGTGAACGGATTTTTCTTTGAATAACGTCCTTGTGG
GGAAGGAGGAAGAAATAGGAAATGGGCGCTGGCCACTAGGCAGAACCCAG
AGAAACCCCAGGTCAGCTGCGTGGGGGTACAGCATTGCGGAGGTAGAAGG
AGAGATGGTAAGCCTAGTGTTAGACTTGCTAACCAGTGAGATGTTCATGA
GCCATCTATGCAGGGAGGCCAGCTGTGTACAGGGGTGAACTTTCCCTTCT
AAAATCCCCTATGGCTTCTAAGAAGTGAGCATTCCGCCCAACCCTTAATG
GACCACTCATAGCCTTTACGGGGATTCCCCATGTTTCCCGCTTCTTTGCC
TTTCTTCACCATCCTGAATTCCCTTTAGTTTGCCGCAGCCCATAATTTTT
GGTCGCCTTTTGTATATCCCTGGCCCCGCAGGTATTCCTCTCTNATTCTC
TCGCTATTCCCACCCCCAATATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_k04.b1 MSMg01no378_k04.b1 CHROMAT_FILE:
MSMg01no378_k04.b1 PHD_FILE: MSMg01no378_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:10 2005
         (437 letters)



>mm_chr10_61274545_61275381
          Length = 837

 Score =  667 bits (345), Expect = 0.0
 Identities = 366/373 (98%)
 Strand = Plus / Minus

                                                                       
Query: 65  tacataaagcagggggcagagaacacttgtccctagacaccggacatccagcttcaaaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 837 tacataaagcagggggcagagaacacttgtccctagacaccggacatccagcttctaaga 778

                                                                       
Query: 125 gcagtgaccactgagagaggtaatcctggaggtggactctggaatgcacccagcttaacc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 gcagtgaccactgagagaggtaatcctggaggtggactctggaatgcacccagcttaacc 718

                                                                       
Query: 185 tgtagagaatttcccaaccagactgagaggctggtcagagaaggggggccctgacagtct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 717 tgtagagaatttcccaaccagactgagaggctggtcagagaaggggggccctgacggtct 658

                                                                       
Query: 245 ccccgagttgaggagacaaactcgggatcaggctacttgtgttcgtgacgggtgcacaga 304
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 657 ccccgagttgaggagacaaactcgggatcaggcaacttgtgttcgtgacgggtgcacaga 598

                                                                       
Query: 305 gaaggcacctccgagacactcactcatcagtgcaggtatggacggaaattgccagaaaac 364
           ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 597 gaaggcacctctgagacactcactcatcagtgcaggtatggatggaaattgccagaaaac 538

                                                                       
Query: 365 tgggaatgaaccacccccagggggcaaggcgaacatttctaagagcccacacagaaccag 424
            |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 537 agggaatgaaccacccccagggggcaaggcgaacatttccaagagcccacacagaaccag 478

                        
Query: 425 gaaagcctgtggc 437
           |||||||||||||
Sbjct: 477 gaaagcctgtggc 465


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space:   354384
Effective search space used:   354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)