BAC Information

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BAC

Clone NameMSMg01-378K12
Chromosome10 (Build37)
Map Location 91,268,603 - 91,438,544
singlet/doubletdoublet
Overlap genenone
Upstream geneAnks1b, Apaf1, 1200009F10Rik, Slc25a3, Tmpo, LOC100041769
Downstream geneLOC100041799, LOC667203, LOC216229, LOC100041814, Nedd1, Gm872, 4930485B16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378K12.T7 (MSMg01no378_k12.b1)MSMg01-378K12.TJ (MSMg01no378_k12.g1)
ACCAG483452AG483453
length769768
length of high quality
(start - end)
513 (49 - 561)527 (78 - 604)
definitionCHROMAT_FILE: MSMg01no378_k12.b1 PHD_FILE: MSMg01no378_k12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:11 2005CHROMAT_FILE: MSMg01no378_k12.g1 PHD_FILE: MSMg01no378_k12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,268,603 - 91,269,112)(91,438,018 - 91,438,544)
sequence
NCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCTATTTATGCTCCTGGTTTCATGAACTTCAATCCACCATGG
ATGAGAGTTCACTTATGGACAACTAGGACTGAGAAATGGGGTGGTGCCTG
TACCATGCTAAGTCAATCTTTCCCTTTTCTTCATCCTACAGCCCAGGGCA
TGATGCTGTCTACATCCAGAGTGAGTCTTCTTCACTCTGGTAAACCTACC
CCTTCCATACCTACCTGTGTGCCTTACCAATCTACTAGGGGCTTTTAAAT
GTTATTAACTGGGCAGGATTAATTTCATTTGGTATGATTGGAAGACATGT
ATTTTCTACACTTTAAAAATACCTATAGATAGGCATTTTTCATCATCTTC
AGAGGTTCAAAGATACTGCATTGTGTACCATTTTAGAGGAATGTTCCTCT
TCCTCGCTATTGTGGATATCAGGTATTCTTTTCATCTTTCCCCTTTGGCT
CTCCAAAGACAAGAATCCACATTGTTCCCAATATCTTAGAACCTGGAAAC
AAGGGGAAGGGGTGATTCGCTCTTAAATTTACCAGGTTTATGTTGAAAAA
TCATCACAGGATAAGGGGCCACAGAAACGTTATTGAACAATAATTGGAAA
TATTGTAAAGAAAAGATTTATAATATGCTGGGCAGAGCTTTGAGAACTAA
TGACATTCTATGATGGAAAACTGTGATGTCATAAGGGCCCTAAAGCAGGG
CCCAGGGGTTGATCCCTAN
NCCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGTCCTACACAAAGCACTGCAAA
GGTAGAAATATCTCCTTCTGATCAAAAGAAGAGAATCTCGGACTTAGAGG
AAGACTTAACATGTCATTTGGGTTAATGGAGTCATCTAGGTAAAAGGGGA
CCCTTAGATAAGCAAGCTCAGCTTAAGCTGAGCTAAAGAGATGGGCAGGA
TAATTAGTCCTTTAACGAGATAAAGTATGTTCCCTTCTCAGAGTTTACCA
GGTCGCAGTCACTCTGCTTCCAATGTTTATCCTCTTGCTGAATTATTCAG
AAGAGTATATCCTCACCTGTCCTTTTTCCTCTTTTCTAATCATGCTTTCC
TCAACGTCTTGGTTTTTCAGCATCTTGGACTTCCCTTGCTCTTTATCTAC
CGCCCTCCTCTCCACCATGTTGCCTCTTGTCAGCCATTTTTCTGACCTCC
ATGGCAGCTTTTTATTGTTCTCATTCTCTTCCACTCTCCTCTCCAGGCAC
CTGCTGAGATTTGCAGCTTCCCTGGNCTCAGCTGTCCTGCTGAACTCTCA
TAAAATTGTCTCCGAGCTTCCATTTGAGTCCACTGTTAAATTCTTTTATT
AGTGAGACTAANAACCCTATGAGAGGGTTCCAGGTCCCCCTGGATCAATG
GGGAACTGCAAGGAGAACTTTGTAATTGCAGAAACCTTACCTACAATATT
TGTTTGCAGGGGTTCAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_k12.b1 MSMg01no378_k12.b1 CHROMAT_FILE:
MSMg01no378_k12.b1 PHD_FILE: MSMg01no378_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:11 2005
         (513 letters)



>mm_chr10_91268400_91269312
          Length = 913

 Score =  948 bits (490), Expect = 0.0
 Identities = 505/510 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctctatttatgctcctggtttcatgaacttcaatccaccatggatgagagttca 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctatttaggctcctggtttcatgaacttcaatccaccatggatgagagttca 263

                                                                       
Query: 64  cttatggacaactaggactgagaaatggggtggtgcctgtaccatgctaagtcaatcttt 123
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 264 cttatggacaactaggactgagaaatggggtggtgcctgtaccatgctgagtcaatcttt 323

                                                                       
Query: 124 cccttttcttcatcctacagcccagggcatgatgctgtctacatccagagtgagtcttct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cccttttcttcatcctacagcccagggcatgatgctgtctacatccagagtgagtcttct 383

                                                                       
Query: 184 tcactctggtaaacctaccccttccatacctacctgtgtgccttaccaatctactagggg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcactctggtaaacctaccccttccatacctacctgtgtgccttaccaatctactagggg 443

                                                                       
Query: 244 cttttaaatgttattaactgggcaggattaatttcatttggtatgattggaagacatgta 303
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 444 cttttaaatgttattaactgggcaggattaatttcatttggtaagattggaagacatgta 503

                                                                       
Query: 304 ttttctacactttaaaaatacctatagataggcatttttcatcatcttcagaggttcaaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 504 ttttctacactttaaaaatacctatagataggcatttttcatcatcttcagaggttcaag 563

                                                                       
Query: 364 gatactgcattgtgtaccattttagaggaatgttcctcttcctcgctattgtggatatca 423
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gatactgcactgtgtaccattttagaggaatgttcctcttcctcgctattgtggatatca 623

                                                                       
Query: 424 ggtattcttttcatctttcccctttggctctccaaagacaagaatccacattgttcccaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ggtattcttttcatctttcccctttggctctccaaagacaagaatccacattgttcccaa 683

                                         
Query: 484 tatcttagaacctggaaacaaggggaaggg 513
           ||||||||||||||||||||||||||||||
Sbjct: 684 tatcttagaacctggaaacaaggggaaggg 713


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no378_k12.g1 MSMg01no378_k12.g1 CHROMAT_FILE:
MSMg01no378_k12.g1 PHD_FILE: MSMg01no378_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:12 2005
         (527 letters)



>mm_chr10_91437818_91438744
          Length = 927

 Score =  990 bits (512), Expect = 0.0
 Identities = 523/527 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtcctacacaaagcactgcaaaggtagaaatatctccttctgatcaaaagaagagaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 tgtcctacacaaagcactgcaaaggtagaaatatctccttctgatcaaaagaagagaatc 668

                                                                       
Query: 61  tcggacttagaggaagacttaacatgtcatttgggttaatggagtcatctaggtaaaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 tcggacttagaggaagacttaacatgtcatttgggttaatggagtcatctaggtaaaagg 608

                                                                       
Query: 121 ggacccttagataagcaagctcagcttaagctgagctaaagagatgggcaggataattag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 ggacccttagataagcaagctcagcttaagctgagctaaagagatgggcaggataattag 548

                                                                       
Query: 181 tcctttaacgagataaagtatgttcccttctcagagtttaccaggtcgcagtcactctgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tcctttaacgagataaagtatgttcccttctcagagtttaccaggtcgcagtcactctgc 488

                                                                       
Query: 241 ttccaatgtttatcctcttgctgaattattcagaagagtatatcctcacctgtccttttt 300
           |||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ttccaatgtcgaccctcttgctgaattattcagaagagtatatcctcacctgtccttttt 428

                                                                       
Query: 301 cctcttttctaatcatgctttcctcaacgtcttggtttttcagcatcttggacttccctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 cctcttttctaatcatgctttcctcaacgtcttggtttttcagcatcttggacttccctt 368

                                                                       
Query: 361 gctctttatctaccgccctcctctccaccatgttgcctcttgtcagccatttttctgacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gctctttatctaccgccctcctctccaccatgttgcctcttgtcagccatttttctgacc 308

                                                                       
Query: 421 tccatggcagctttttattgttctcattctcttccactctcctctccaggcacctgctga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tccatggcagctttttattgttctcattctcttccactctcctctccaggcacctgctga 248

                                                          
Query: 481 gatttgcagcttccctggnctcagctgtcctgctgaactctcataaa 527
           |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 247 gatttgcagcttccctggcctcagctgtcctgctgaactctcataaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)