Query= MSMg01no378_m07.b1 MSMg01no378_m07.b1 CHROMAT_FILE:
MSMg01no378_m07.b1 PHD_FILE: MSMg01no378_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:20 2005
(503 letters)
>mm_chr10_72625910_72626816
Length = 907
Score = 801 bits (414), Expect = 0.0
Identities = 485/518 (93%), Gaps = 19/518 (3%)
Strand = Plus / Plus
Query: 5 gaattcttacttat-tctgttttgtgtttgtttgtttctttgttttcccctgaatttgcc 63
|||||||| ||||| | ||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 205 gaattcttgcttatatttgttttgtgtttgcttgtttctttgttttcccccgaatttgcc 264
Query: 64 taatcagttacattctcgacaaca-ggagaaagatacaagccagaatcttccagtgagag 122
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 265 taatcagttacattctcaacaacaaggagaaagatacaagccagaatcttccagtgagag 324
Query: 123 actggtgctgacaggtgtagggaagggaatgagaggatgctggaccttctggtaggtcct 182
||||||| ||| |||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 325 actggtggtgataggtgtagggaagggaataagaggatgctgaaccttctggtaggtcct 384
Query: 183 tttctactctgtccttccttgtttgaagcttgtactctagtggtgccccatttccaagta 242
|||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||
Sbjct: 385 tttctactctgtccttccctatttgaagcttatactctagtggtgccccatttccaagta 444
Query: 243 cagcttttgtttttctattagtgcatattttttt--attacatcttgtgttttcccccaa 300
|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 445 cagcttttgtttttttattagtgcatatttttttttattacatcttgtgttttcccccaa 504
Query: 301 gactataatacaattttattatttcctcccttctttttttcctatatataactttccttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gactataatacaattttattatttcctcccttctttttttcctatatataactttccttg 564
Query: 361 ctctctttcaaattcgtggtctatttttacatttattgttattgcagtcatacacaacta 420
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctctctttcaaattcatggtctatttttacatttattgttattgcagtcatacacaacta 624
Query: 421 ctactactactacta-t--------------tactactactactacactaattataacct 465
||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 625 ctactactactactactactactactactactactactactactacactaattataacct 684
Query: 466 gcttagtctgcataatactacctgtattcatgctttca 503
||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gcttagtctgcataatactacctgtattcatgctttca 722
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 907
Length adjustment: 10
Effective length of query: 493
Effective length of database: 897
Effective search space: 442221
Effective search space used: 442221
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no378_m07.g1 MSMg01no378_m07.g1 CHROMAT_FILE:
MSMg01no378_m07.g1 PHD_FILE: MSMg01no378_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:20 2005
(479 letters)
>mm_chr10_72782980_72783862
Length = 883
Score = 739 bits (382), Expect = 0.0
Identities = 458/488 (93%), Gaps = 16/488 (3%)
Strand = Plus / Minus
Query: 1 tttgtttagctctgagccccaatttttaatggggttatttgattttctggagtctacctt 60
||||| |||||||||||||| |||||||||||||||||||||||||||||| || |||||
Sbjct: 774 tttgtctagctctgagcccc-atttttaatggggttatttgattttctggaatccacctt 716
Query: 61 cttgagttctttatatatatctggcagatattccttcttggaatataggctgtaggctag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 cttgagttctttatatatatctggcagatattccttcttggaatataggctgtaggctag 656
Query: 121 ggat-gtttctctatgtggtatttgattttaaaagaaagcattgaaagggttaaacaagc 179
|||| |||| |||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 655 ggatggttt-tctatgtggtgtttgattttaaaagaaagtattgaaagggttaaacaagc 597
Query: 180 tttgcagaacagttcctgagtccctcgagttcatagatgaatgctggttgtttggtttct 239
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 596 tttgcagaacagttcatgagtccctcaagttcatagatgaatgctggttgtttggtttct 537
Query: 240 gctctgtccatccattcactctgcagcctgtgccgaacacttgtcagat-caaagttctg 298
||||||||||||||||||||| ||||||||||| || |||||||||||| ||| ||||||
Sbjct: 536 gctctgtccatccattcactcagcagcctgtgcagaccacttgtcagatacaa-gttctg 478
Query: 299 cttc-----tgagattaaaggagcaaggaaagggaagctactgttaaagagaggaaatgg 353
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 cttcaggtctgagattaaaggagcaaggaaagggaagctactgttaaagagaggaaatgg 418
Query: 354 tcgtccacaatgaactcccaactctgaagcagtatatgcagtcctgacacagagccacct 413
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 tcgtccacaatgaactcacaactctgaagcagtatatgcagtcctgacacagagccaccg 358
Query: 414 tctggggggcaccataggaaacaggatgccaggccttatcttctttgttggtttc--aca 471
|||||||| ||| |||||||||||||||||||||||||||||||||||| | | |||
Sbjct: 357 tctggggg-cacaataggaaacaggatgccaggccttatcttctttgttag---ccaaca 302
Query: 472 ggatctgc 479
||||||||
Sbjct: 301 ggatctgc 294
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 883
Length adjustment: 10
Effective length of query: 469
Effective length of database: 873
Effective search space: 409437
Effective search space used: 409437
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
