BAC Information

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BAC

Clone NameMSMg01-378M10
Chromosome10 (Build37)
Map Location 114,545,254 - 114,545,503
singlet/doubletsinglet
Overlap geneTph2
Upstream geneTrhde, 4930473D10Rik
Downstream geneTbc1d15, LOC668041, Rab21, Tmem19, Thap2, Ccdc131, Lgr5, A930009A15Rik, LOC668071, EG668073, Tspan8, Ptprr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378M10.T7 (MSMg01no378_m10.b1)MSMg01-378M10.TJ (MSMg01no378_m10.g1)
ACCAG483544AG483545
length755753
length of high quality
(start - end)
259 (324 - 582)254 (323 - 576)
definitionCHROMAT_FILE: MSMg01no378_m10.b1 PHD_FILE: MSMg01no378_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:21 2005CHROMAT_FILE: MSMg01no378_m10.g1 PHD_FILE: MSMg01no378_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTCTTTACCACTGGTCCAAGCAGATATTCTTGTCTTCTAAACA
GATACTTTTGCGTCTGATAGACCCTGAACATTGATGTGCGTGCGTAGCCA
GGATGTGTGTACCATCTTCGTGGGAGAGCCATGTGACCCACCTCTACAGC
TGTCTCCGTATTGGTGCATTGACTTGCTTGCTTTGTGTATAGTTTTGTGG
ACACCTGTGTGCCAAAGTGCACGTGCAGGAGTCCGTTCTCTCTGTCCACC
ACGGGGGTCTGGAGAGTTTTTTCATGCGGTCAGGCCTACGTGGAGCAGGC
TTGCCACACCCCTCGTTTTCGAAGCTTGTTTTCAAATGTGTCCAAGTGTT
TTGCCTGCATGTATGTCCGCATACCACATGCATGCCTGTGAAGGTCAAAA
GAGGGTGTCAGATCCAGAACTGGAGTCACAGATAGTATGAGCCATTGTGT
GGGTGCTGGGAGTCAGACTCAGGTCCTTCACTAGAACCTGGGCTGTGTCA
TAGATCCCCTTCCTCAAGCTTCCATTCCTTGAAGGACACGTGACAGCGCT
TGACTTTAAATGGCCTTTATATCCAATATACCAGCTCTTTTAACTTGCTA
TTTCTGGCAACGGTGGGTTCCCTTCTCTCTCCCCCTTTATGTGGATGTTG
CGACTTGAATTTTTTTTATCTCTGCTCGCTTCTGTTTACCCCGTTCACTC
TGCCG
NCGATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCTCTCGGGCACACAC
AATATTTCCTCATCTATTTTCCCAGGCTGTTTCCTGTGACTTGCCTTTTT
CTCTGTGTTTGCTCAGGGGAGGTGTGCTATTAAGTCAGAGGCAGTTCTTC
CATCTCCAGGGAGAAGCTTGACATCGTTCCAGGCGAGGCCCTGCCTTCTA
TTATTTATGGATAAAACACTTTACATTGTAAAATAGCAGACCAGCCCCAT
CTAAGACCCATTTATTATTTAAACTGAACCGTCTGCATTTCAGAAAGACA
GAGTTGGGGTGCTGAAAGTTAGATGACCCCCCAAGGTCACATGCAAAAGT
AGAAACTCCCCCAGGGGCCTTCTCTGTGTGTAGTGCTCACTCCCATGGCC
ACCTGGGTGCCTAGGCTCACAGCCATGTGAAATGGACAAGCTGGCATGAT
TTTCACACTCACCACTGTGCCAGGCAGCTTCCTGGTGCATTAGCTCATCA
ATTTCACATCTCTCTGGCATTATAGAGCCCTATTAGTCTCGTTTTAAAGA
TGATGACATTGAAAGACGGAAGATGTTGCTATGATTCTGTCCTTGGTCAG
AGTCGTATCTTTTTCCGCCAGGTCCTGAAATGTAGGCTTCTGAGTTCGTT
TCTACTTTATCCCCTTTTAATTCGACACTTTTTATCTTGATGCACCCCGA
TTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_m10.g1 MSMg01no378_m10.g1 CHROMAT_FILE:
MSMg01no378_m10.g1 PHD_FILE: MSMg01no378_m10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:21 2005
         (254 letters)



>mm_chr10_114545054_114545707
          Length = 654

 Score =  476 bits (246), Expect = e-139
 Identities = 249/250 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgaaccgtctgcatttcagaaagacagagttggggtgctgaaagttagatgacccccc 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgaaccatctgcatttcagaaagacagagttggggtgctgaaagttagatgacccccc 260

                                                                       
Query: 61  aaggtcacatgcaaaagtagaaactcccccaggggccttctctgtgtgtagtgctcactc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaggtcacatgcaaaagtagaaactcccccaggggccttctctgtgtgtagtgctcactc 320

                                                                       
Query: 121 ccatggccacctgggtgcctaggctcacagccatgtgaaatggacaagctggcatgattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccatggccacctgggtgcctaggctcacagccatgtgaaatggacaagctggcatgattt 380

                                                                       
Query: 181 tcacactcaccactgtgccaggcagcttcctggtgcattagctcatcaatttcacatctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcacactcaccactgtgccaggcagcttcctggtgcattagctcatcaatttcacatctc 440

                     
Query: 241 tctggcatta 250
           ||||||||||
Sbjct: 441 tctggcatta 450


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space:   158025
Effective search space used:   158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)