BAC Information

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BAC

Clone NameMSMg01-378P03
Chromosome10 (Build37)
Map Location 128,473,311 - 128,473,556
singlet/doubletsinglet
Overlap genenone
Upstream geneNaca, Ptges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a, Usp52, Tmem4, Cs, Coq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41, Smarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2, Si, Dgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763, EG622733
Downstream geneEG546487, Olfr765, Olfr768, Olfr769, Olfr770, Olfr771, Olfr772, Olfr773-ps1, LOC624925, Olfr774, Olfr1518, Olfr776, Olfr777, Olfr778-ps1, LOC544749, Olfr780, Olfr781, Olfr782, Olfr783-ps1, Olfr784, EG546488, Olfr786, Olfr787, Olfr788, Olfr789-ps1, Olfr790, Olfr791, Olfr792, GA_x5J8B7W6HFP-3168293-3169194, Olfr794, GA_x5J8B7W6HFP-3198834-3199739, Olfr796, GA_x5J8B7W6HFP-3231749-3230798, Olfr798, Olfr799, Olfr800, Smt3h2-ps3, Olfr801, Olfr802, Olfr803, Olfr804, Olfr805, Olfr806, Olfr807, Olfr808, Olfr809, Olfr810, Olfr811, Olfr812, Olfr813, Olfr814, Olfr815, Olfr816, Olfr1544-ps1, Olfr817-ps1, Olfr818, LOC100043200, Olfr247, LOC100043203, Olfr820, Olfr821
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378P03.T7 (MSMg01no378_p03.b1)MSMg01-378P03.TJ (MSMg01no378_p03.g1)
ACCAG483674AG483675
length752756
length of high quality
(start - end)		560 (74 - 633)245 (77 - 321)
definitionCHROMAT_FILE: MSMg01no378_p03.b1 PHD_FILE: MSMg01no378_p03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:33 2005CHROMAT_FILE: MSMg01no378_p03.g1 PHD_FILE: MSMg01no378_p03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GAATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCC
GCGGAATTCTCAACTGTTGCCAACCAAATGGCTGAGAAGCACCTGAAAAA
ATGTTCAACATCCTTAATCATCAGGAAAATGCATATCAAAACAACCCTGA
GATTCTACCTCATACCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGAC
AGCAGATGCTGGCGAGGATGTAGAGAAAGAGGAACATTCCTCCATTGCTG
GTAGATTGTAAGCTTGTACAACCACTCTGGAAGTCAGTCTGGTGGTTCCT
CAGAAAATTGGACATAGTACTACCGGAATATCCAGCAATACCTCTCCTGA
GCATATATCCAGAAGATGTTCCAACTGGTAATAAGAACACATGCTCCACT
ATGTTCATAGAAACCTTATTTATAATAGCCAGAAGCTGGAAAGGACCCAG
ATATCCCTCAATAGAGGAATGGATACAGAAAATGTGGTACATTTTCACAA
TGGAGTACTACTCAGCTATTAAAAACAATGAATTTATGAAATTCTTGGGC
AAATGGATGTATCTGGAGGATATCATCCTTAGTGAGGTAACCCAATCATA
AAAGAAGTCACTAGATATACACTCACTGATAAGTGGATACTAGCCCAGAA
ACTTAGAATACCCCAGATACAATTTACAAAACACAAGAAAATCTTGAAGA
AGGAAGACCAAACTGTGGATACTTCATTCCTCCTTAAAATAGGGTACAAA
AT

CACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTCAGTTCTGACGTCAGGATG
ATCTCAAAGCCCTCAACAGCTTTGATTGCATCTCTCCATTTTGGTGACAT
GGTAATTACTTTGCAATTTGGGGTCATCAGTGGCCATTCTGTATGATTTA
GAGGGCAGTGGAAGGATGGTGTCTTATTTAGTGTTTTATTATTGTGAAGA
GACACTATGACTGAGGTAACTTCTATTAAGGCAACCATTTAATTGGGGCT
GGTTCATAATTTCAGAGGTTCTTTTCATCATCATCATGAAATCAGTTAGG
AGGAGGCTCTGGATCACACTGGCCAGATGAGAGCACATATATGAGACCTC
AAAGCCCCACGTCCACAGTGACACACTTCCTCCAATGATGCCACACCTCC
AATAGTGCTACTTCCCATGGGCTAAGCATATCCAAACCACCACAGATGGC
ATTTCTTAGAGAAACCCTATTACTCANAACTGAGATACTGTTGGTGTTTG
AGAACCAAAAATCACTAGAAATCAGAGAACCTGAATTGAACCAGCCACAG
CCTCAGAGTGAGACACAGCCTAAGGGGGCAAGAATGGAGAGCAGGATGGC
CAGGTGCTGACATATTGCAGGAGGCTTGGCTCAAAAAGTGATGTGAAAAG
CCTCACCCCTCATGTAGGGATCAGGTTTTACCCTGATATTATTACTCGAG
TCTTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_p03.g1 MSMg01no378_p03.g1 CHROMAT_FILE:
MSMg01no378_p03.g1 PHD_FILE: MSMg01no378_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:33 2005
         (245 letters)



>mm_chr10_128473111_128473756
          Length = 646

 Score =  468 bits (242), Expect = e-136
 Identities = 245/246 (99%), Gaps = 1/246 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgtcagttctgacgtcaggatgatctcaaagccctcaacagctttgattgcatctctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgtcagttctgacgtcaggatgatctcaaagccctcaacagctttgattgcatctctc 260

                                                                       
Query: 61  cattttggtgacatggtaattactttgcaattt-ggggtcatcagtggccattctgtatg 119
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 cattttggtgacatggtaattactttgcaatttgggggtcatcagtggccattctgtatg 320

                                                                       
Query: 120 atttagagggcagtggaaggatggtgtcttatttagtgttttattattgtgaagagacac 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttagagggcagtggaaggatggtgtcttatttagtgttttattattgtgaagagacac 380

                                                                       
Query: 180 tatgactgaggtaacttctattaaggcaaccatttaattggggctggttcataatttcag 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatgactgaggtaacttctattaaggcaaccatttaattggggctggttcataatttcag 440

                 
Query: 240 aggttc 245
           ||||||
Sbjct: 441 aggttc 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 646
Length adjustment: 9
Effective length of query: 236
Effective length of database: 637
Effective search space:   150332
Effective search space used:   150332
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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