BAC Information

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BAC

Clone NameMSMg01-379A05
Chromosome10 (Build37)
Map Location 129,610,937 - 129,775,576
singlet/doubletdoublet
Overlap geneOlfr826, Olfr827, Neurod4
Upstream geneOlfr772, Olfr773-ps1, LOC624925, Olfr774, Olfr1518, Olfr776, Olfr777, Olfr778-ps1, LOC544749, Olfr780, Olfr781, Olfr782, Olfr783-ps1, Olfr784, EG546488, Olfr786, Olfr787, Olfr788, Olfr789-ps1, Olfr790, Olfr791, Olfr792, GA_x5J8B7W6HFP-3168293-3169194, Olfr794, GA_x5J8B7W6HFP-3198834-3199739, Olfr796, GA_x5J8B7W6HFP-3231749-3230798, Olfr798, Olfr799, Olfr800, Smt3h2-ps3, Olfr801, Olfr802, Olfr803, Olfr804, Olfr805, Olfr806, Olfr807, Olfr808, Olfr809, Olfr810, Olfr811, Olfr812, Olfr813, Olfr814, Olfr815, Olfr816, Olfr1544-ps1, Olfr817-ps1, Olfr818, LOC100043200, Olfr247, LOC100043203, Olfr820, Olfr821, Olfr822, Olfr1542-ps1, Olfr823, LOC382471, Olfr824, LOC672405, Olfr825
Downstream gene5830405N20Rik, EG625068, LOC100043719, EG623734, EG625109, EG625131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-379A05.T7 (MSMg01no379_a05.b1)MSMg01-379A05.TJ (MSMg01no379_a05.g1)
ACCAG483726AG483727
length732733
length of high quality
(start - end)		419 (68 - 486)504 (75 - 578)
definitionCHROMAT_FILE: MSMg01no379_a05.b1 PHD_FILE: MSMg01no379_a05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:39 2005CHROMAT_FILE: MSMg01no379_a05.g1 PHD_FILE: MSMg01no379_a05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,775,254 - 129,775,576)(129,610,937 - 129,611,440)
sequence
NCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTCGATTCTAACCACCAACCAAAGAGTACACATGGAGGGACCCA
TGGCTCCAGCTGTATATGTGGCAGAGGATGGCCTTGTCAGACATCAATGG
GAGGAGAGGCCCTTGGTCCTGGAAGTCCTGATGCCCCAGTGTAGGGGAAT
GCCACGGTGGAGAGGAGGGAGTGGGTGGGTGGGGCAGCACCCTTATAGAA
GCAGGGGAAGGGAGGATGGAATAGGGAGTTTCTGGGGCGGGGCAGGGGAA
ACCGGGAAAGGGACTATTATTCAAAATGTAAATAAATAAAATATCCAATA
AAATATTAAAAAATTAGAAAAAATTAGAAAAAGAGAAAAACTTAAAAGGA
TGGCAGTAAGGCATGAAAAGCATGGGGAAAAGGAATAACTGGGAGGGGGA
GACAGGAGGGAGAGGTGAGGTAGAGAAATTAGTGGAGAAGAGAGAAAGGT
AATGAGGGAAGAAAATGAGGCAAGGTATGTGCTATCATCAGTATGGATGT
GTCTAGACGATTATTCTCACATCTCTCATTTTCTTTAATCCCTTCTCTCT
TTTTTCTTTATTTCTTTTTTTTTTTCCTTTTTATCTCTCCTTTGTTCGTT
TTTTTTTTCTTTCCTATCTCTTCTTTCTCTTTCATTCCTTAACTTCCTAC
CATCCCTCACCTTTCTCTTCCTTTCTTTTCTG

GATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTGGGATGGTCAGATGGGGAAAAGT
GGGTAGAGCTTTCACCATCTCAGGATTAGCTGTCATTTATAGGAATCCAG
AAGAGAGCAGTTAGTTATACCTTTTGTTGTTAGTCTGGTATGTTTGATGG
GTTTTTGGACCTGGTTTTTTAAGTATGGTTTTGATACACTCAAATGCCCT
TGTTTCCAATACATCAGTAGTGACATGCATGACAGGCCAAAAGCCTGGAT
GCAGTCCTGAGGCGAAGAGTTTCATGGAAACTTAGTCTCCTGGAACTGTG
GCATTCCATAGAACGTATGCTCCAATTTTGTCCTTGCAAATGGATCTGTG
TGCTTTCTTTCAGTATTGTTTTGTTATAGGTGCCTCCAAGCAATGACTTG
CCAAATACCTAAGCAAAATCAAACTTTGCTTCCTGGCCTTCACCAATGCC
CTAGTAGACATTGAGACAACCCTGGGCTTGGAATTCAGTAAGAATGTTGC
CTATTCAGTGACATTCAGAATTGCCTCTAGTATTGTAAGAGAGACAGTGA
AAGAAATCAGGCTTTACTATCTACTACTATCTACTACATAGAGTTAGAAA
TCTCAGTGCAAGCTTAACAATGTAAGTTTAGAATTCTTATTATAGGTATG
TATGGCGGACTAAATTATTTATTATTAGAAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no379_a05.b1 MSMg01no379_a05.b1 CHROMAT_FILE:
MSMg01no379_a05.b1 PHD_FILE: MSMg01no379_a05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:39 2005
         (419 letters)



>mm_chr10_129774758_129775576
          Length = 819

 Score =  609 bits (315), Expect = e-178
 Identities = 321/323 (99%)
 Strand = Plus / Minus

                                                                       
Query: 97  tggtcctggaagtcctgatgccccagtgtaggggaatgccacggtggagaggagggagtg 156
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 tggtcctggaagtcctgatgccccagtgtaggggaatgccacggtggagaggagggagtg 760

                                                                       
Query: 157 ggtgggtggggcagcacccttatagaagcaggggaagggaggatggaatagggagtttct 216
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 ggtgggtggggcagcacccttatagaagcaggggaagggaggatggaatagggagtttct 700

                                                                       
Query: 217 ggggcggggcaggggaaaccgggaaagggactattattcaaaatgtaaataaataaaata 276
           |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 699 ggggcggggcaggggaaaccgggaaagggactaacattcaaaatgtaaataaataaaata 640

                                                                       
Query: 277 tccaataaaatattaaaaaattagaaaaaattagaaaaagagaaaaacttaaaaggatgg 336
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 tccaataaaatattaaaaaattagaaaaaattagaaaaagagaaaaacttaaaaggatgg 580

                                                                       
Query: 337 cagtaaggcatgaaaagcatggggaaaaggaataactgggagggggagacaggagggaga 396
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 cagtaaggcatgaaaagcatggggaaaaggaataactgggagggggagacaggagggaga 520

                                  
Query: 397 ggtgaggtagagaaattagtgga 419
           |||||||||||||||||||||||
Sbjct: 519 ggtgaggtagagaaattagtgga 497


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no379_a05.g1 MSMg01no379_a05.g1 CHROMAT_FILE:
MSMg01no379_a05.g1 PHD_FILE: MSMg01no379_a05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:39 2005
         (504 letters)



>mm_chr10_129610737_129611640
          Length = 904

 Score =  951 bits (492), Expect = 0.0
 Identities = 501/504 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgggatggtcagatggggaaaagtgggtagagctttcaccatctcaggattagctgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgggatggtcagatggggaaaagtgggtagagctttcaccatctcaggattagctgtc 260

                                                                       
Query: 61  atttataggaatccagaagagagcagttagttataccttttgttgttagtctggtatgtt 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttataggaatccagaagagagtagttagttataccttttgttgttagtctggtatgtt 320

                                                                       
Query: 121 tgatgggtttttggacctggttttttaagtatggttttgatacactcaaatgcccttgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgatgggtttttggacctggttttttaagtatggttttgatacactcaaatgcccttgtt 380

                                                                       
Query: 181 tccaatacatcagtagtgacatgcatgacaggccaaaagcctggatgcagtcctgaggcg 240
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 tccaatacatcagtagtgacatgcgtgacaggccaaaagcctggatgcagtcctgaggcg 440

                                                                       
Query: 241 aagagtttcatggaaacttagtctcctggaactgtggcattccatagaacgtatgctcca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 aagagtttcatggaaacttagtctcctggaactgtggcattccatagaatgtatgctcca 500

                                                                       
Query: 301 attttgtccttgcaaatggatctgtgtgctttctttcagtattgttttgttataggtgcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attttgtccttgcaaatggatctgtgtgctttctttcagtattgttttgttataggtgcc 560

                                                                       
Query: 361 tccaagcaatgacttgccaaatacctaagcaaaatcaaactttgcttcctggccttcacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tccaagcaatgacttgccaaatacctaagcaaaatcaaactttgcttcctggccttcacc 620

                                                                       
Query: 421 aatgccctagtagacattgagacaaccctgggcttggaattcagtaagaatgttgcctat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatgccctagtagacattgagacaaccctgggcttggaattcagtaagaatgttgcctat 680

                                   
Query: 481 tcagtgacattcagaattgcctct 504
           ||||||||||||||||||||||||
Sbjct: 681 tcagtgacattcagaattgcctct 704


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space:   441636
Effective search space used:   441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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