BAC Information

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BAC

Clone NameMSMg01-379B05
Chromosome10 (Build37)
Map Location 110,927,655 - 110,928,131
singlet/doubletsinglet
Overlap geneNap1l1
Upstream gene9230102K24Rik, LOC100042518, E2f7, Csrp2, Zdhhc17, EG432502, LOC667904, Osbpl8, Bbs10
Downstream geneEG382421, Phlda1, Krr1, Glipr1, EG639527, Glipr1l1, Glipr1l2, LOC627895, Glipr1l3, Caps2, Kcnc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-379B05.T7 (MSMg01no379_b05.b1)MSMg01-379B05.TJ (MSMg01no379_b05.g1)
ACCAG483774AG483775
length734738
length of high quality
(start - end)
546 (48 - 593)477 (76 - 552)
definitionCHROMAT_FILE: MSMg01no379_b05.b1 PHD_FILE: MSMg01no379_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:44 2005CHROMAT_FILE: MSMg01no379_b05.g1 PHD_FILE: MSMg01no379_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGCCTGTAGATTGTTGCAAAGATATATTGTTAAAACAAAAGGT
GTAAGGATATCCTGCTATTTTCAAGGTTGACTTGAGTGTTAGTTAGGGTT
TCTATTCCTGCACAAACATCATGACCAAGAAACAAGTTGGGGAGGTAAGG
ATTTATTCATCTTACACTTCCACATTGCAGTTCATCACCAAAGGAAGTCC
CGACTGGAACTCAAGCAGGTCAGGAAGCAGGAGCTGATACAGAGGCCATG
GAGGGATGTTACTTACTGGCTTGCTTCCCCTGGCTTGCTCAGCTTGCTTT
CTTATAGAACCCAAGACTCCCAGCCCTGGGATGGCAACACCCACAATGGG
CCCTCCCTTCTTGATCACTAATTGAGAAAATGCCCCACAGCTGGATCTCA
TGGAGGCATTTCCTCAAGAGAGGCTCCTTTCTCTGTGATAACTCCAGCTT
GTGTCAAGTTGACACACAAAACCAGCCAGTACAACTTGTAACTTAAAATA
TTAGATTATAGTATATGTACCTCCGCCTGCACTTTTGTCCCAGGCCCCCC
GCTCAGGTTAAAAGTAACCTGTTTTTAGGTTCACCAATTGGCACCAGTTT
TCACAGTGACTTTCTGTCAATGTGCACCTTTTTAAGGCTGAGCCTTTAAA
AATATGTGGCAGAACCCCGTGACTCCCCCTGAAG
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTTCGGGTCTTCTTTTTCTTCATC
CTTTTTCTCATCTTCAATCTTGGCCTTTTCTTTCAGCTCCTCCTTGAAAA
AGGACAGCAAACAACGTAATGACTACTATGATAAGTCTCCTGATAAACCT
TCAACTAACACATTGGAAAACTTCAATCCCATAGCAATCAATGCTCTCAT
CGCCACCTTAGAAAGACCCACCACGCACATCAAGAACTTGAAGAGTCAAT
ATCAAGATCTTTTAACCACAGCAAACAAAAACCTTGTCCAGTGTTCAGCT
TGAGGTCCTTACTCAAATGCCTGATCATACCCTGCAGAGTAGCTACGTTA
AGAAGCATGGTCCCCTAGCTCAGCACAGCCTTCCCTCACCGCCGTCATCC
TTCACTGCAGGCAGGTAGGTCACAGCAAAGCTTTTCACCTGAAAATCACA
TGCTCTTCCAACAGTCCTCAAAAGCTCAAAGGAAACTACAGGAGACGCTT
GAAATGCAAAAGGAGGCACTGCCAGGCTGAGGAATAGCTCATCTTTATCC
CAGTATTTACAAAGTTGCTTATAAATGCTACTTCAAACAAACTGGTTATG
GTCCGTCCCAGCCTCTTAAATACGGGAAATTACTGGGTATTACCCGAAAC
TTTTTCCTCCTCACTGGGGTTCCCCTCCCAATTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no379_b05.g1 MSMg01no379_b05.g1 CHROMAT_FILE:
MSMg01no379_b05.g1 PHD_FILE: MSMg01no379_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:44 2005
         (477 letters)



>mm_chr10_110927455_110928331
          Length = 877

 Score =  878 bits (454), Expect = 0.0
 Identities = 472/478 (98%), Gaps = 2/478 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttcgggtcttctttttcttcatcctttttctcatcttcaatcttggccttttctttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ctttcgggtcttctttttcttcatcctttttctcatcttcaatcttggccttttctttca 618

                                                                       
Query: 61  gctcctccttgaaaaaggacagcaaacaacgtaatgactactatgataagtctcctgata 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gctcctccttgaaaaaggccagcaaacaacgtaatgactactatgataagtctcctgata 558

                                                                       
Query: 121 aaccttcaactaacacattggaaaacttcaatcccatagcaatcaatgctctcatcgcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aaccttcaactaacacattggaaaacttcaatcccatagcaatcaatgctctcatcgcca 498

                                                                       
Query: 181 ccttagaaagacccaccacgcacatcaagaacttgaagagtcaatatcaagatcttttaa 240
           ||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||
Sbjct: 497 ccttagaaagacccaccacgcacatcaagaacttgaagagtcagtaacaagatcttt-aa 439

                                                                       
Query: 241 ccacagcaaacaaaaaccttgtccagtgttcagcttgaggtccttactcaaatgcc-tga 299
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 438 ccacagcaaacaaaaaccttgtccagtgttcagcttgaggtccttactcaaatgccctga 379

                                                                       
Query: 300 tcataccctgcagagtagctacgttaagaagcatggtcccctagctcagcacagccttcc 359
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tcataccctgcagagcagctacgttaagaagcatggtcccctagctcagcacagccttcc 319

                                                                       
Query: 360 ctcaccgccgtcatccttcactgcaggcaggtaggtcacagcaaagcttttcacctgaaa 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ctcaccgccgtcatccttcactgcaggcaggtaggtcacagcaaagcttttcacctgaaa 259

                                                                     
Query: 420 atcacatgctcttccaacagtcctcaaaagctcaaaggaaactacaggagacgcttga 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 atcacatgctcttccaacagtcctcaaaagctcaaaggaaactacaggagacgcttga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space:   404889
Effective search space used:   404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)