BAC Information

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BAC

Clone NameMSMg01-379B23
Chromosome10 (Build37)
Map Location 112,721,436 - 112,721,825
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnc2, LOC100042639, 4921506J03Rik
Downstream geneLOC100042655, LOC100042666
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-379B23.T7 (MSMg01no379_b23.b1)MSMg01-379B23.TJ (MSMg01no379_b23.g1)
ACCAG483810AG483811
length760787
length of high quality
(start - end)		451 (40 - 490)391 (70 - 460)
definitionCHROMAT_FILE: MSMg01no379_b23.b1 PHD_FILE: MSMg01no379_b23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:48 2005CHROMAT_FILE: MSMg01no379_b23.g1 PHD_FILE: MSMg01no379_b23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
ATGATCATACCCCCACTGTCGTACTTCTCTGGCTGTGAAATGAGTTCCTT
GGTCAGAATCAATACTGTGTGGAATACCATGATGATAGATAAGGCATTCT
GTGAGTCCATGGAGGATAGTTTTGGTAGAAGCAGGAGAGGCAAATCCATA
ACCAGAATAAGTATTACTCCAGTAAGAACAAAACGCTGTCCTTTCCACAG
AGGAGTGGTCCAATGTAGTCAACCTGCCACAAGGTTGCTGGCTGGTCACT
TCAACGAATGATGCCTTATCTGGTGCTCAATATTGGTTTCTGCTGTTGGT
AGATCTGGCATTCAGCAGCAGCTGTAGCCAGGTCAGCCTTGGTGAGTGGA
AGTCCGTGTCGCTGAGCCCAAGCATAACCTCTGGCTCGACCACCATGGCC
ACTTTGTTCATGTGCCCATTGAGCAATGACAGGGATGGCTGGGGAAAGAG
ACTGTCCACAGAACGGGTCATCTTATCCACTTGATTATTGAACTCCTCCT
CGGCTGAAGTCACCTTTTTGTGAGCCATTATATGGGGACAAAAAAACTTC
CCTCCATTTGCCCTCTAGAAAGAACTTCCCATACTTCTTCCCCCAAGGCT
TTTCCCCATATTTCCTCCGGGAGCTTTCAAGCCCGGCCCACCGTTTAGTC
TCCACTTTGGAGAAAATAAACTTGGCTATTCTCTTTTTACAATGGATAAA
CTGGGCGGTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGCAGTTGAATGGGAGTTATATTCATTATCT
TTCAAGTTAAGTAGATTGATTTTTAAGTACCTTTATATGGTAAAAGTCTT
AATGGCATAAAATAAAAGGAAAAAAAAAACCAAGATTTTACAAGGATTTT
TTTTAATAAAAATTATCAAATATTTTCCAGGACTCAGAACAACAATATAC
ACACTTAAGCCTGCAAATAAAAAAAAATGCAATGGCTCTAAGTGTGATGA
AGGCAACATTTGACTTGGGGCTGCTTCTCATTTCCCATGCTTGAATGCAG
ATACTTCTATTTCCTCTCCACATTTTCTGTTCAGAAATGAAAACTAACAA
TCTCAACAAGAAGCAGGCATGAATATGCAACGATGAATTAGTTTATTGAC
AAGGAACACAAGCCCTCATTTTAATTTTTTAATAATTATACAGAGAAATT
GCATTTTCCTCTAATGTAGTGAATCTTGAAAAATATGAGAAAGGGACTCT
TTTGGAAGGAAAAGGCTGTCCACTATATCTGTTGGGNCAATCATGGAAAA
AATCCCACGAAGGGTATTTCTAAATCTGCTTTCCCCACCCAATCACAACA
CACTCCTTTTCCCAAATTTTTCTCGCCCCTTAACCCCCCTGGCCCCAACT
CGTTTTCCTTTCTTCCTCCCATGCTCCGATGTCATTCACATCACTTTTCC
TTTCCCCCCTTTTTCCCCACTCCCCCCTCCCTCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no379_b23.g1 MSMg01no379_b23.g1 CHROMAT_FILE:
MSMg01no379_b23.g1 PHD_FILE: MSMg01no379_b23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:48 2005
         (391 letters)



>mm_chr10_112721236_112722024
          Length = 789

 Score =  723 bits (374), Expect = 0.0
 Identities = 387/392 (98%), Gaps = 3/392 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcagttgaatgggagttatattcattatctttcaagttaagtagattgatttttaagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcagttgaatgggagttatattcattatctttcaagttaagtagattgatttttaagta 260

                                                                       
Query: 61  cctttatatggtaaaagtcttaatggcataaaataaaaggaaaaaaaaaaccaagatttt 120
           |||||||||||||| ||||||||||||||||||||||||||||||||   ||||||||||
Sbjct: 261 cctttatatggtaacagtcttaatggcataaaataaaaggaaaaaaac--ccaagatttt 318

                                                                       
Query: 121 acaaggattttttttaataaaaattatcaaatattttccaggactcagaacaacaatata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 acaaggattttttttaataaaaattatcaaatattttccaggactcagaacaacaatata 378

                                                                       
Query: 181 cacacttaagcctgcaaataaaaaaaaa-tgcaatggctctaagtgtgatgaaggcaaca 239
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 379 cacacttaagcctgcaaataaaaaaaaaatgcaatggctctaagtgtgatgaaggcaaca 438

                                                                       
Query: 240 tttgacttggggctgcttctcatttcccatgcttgaatgcagatacttctatttcctctc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tttgacttggggctgcttctcatttcccatgcttgaatgcagatacttctatttcctctc 498

                                                                       
Query: 300 cacattttctgttcagaaatgaaaactaacaatctcaacaagaagcaggcatgaatatgc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cacattttctgttcagaaatgaaaactaacaatctcaacaagaagcaggcatgaatatgc 558

                                           
Query: 360 aacgatgaattagtttattgacaaggaacaca 391
           ||||||||||||||||||||||||||||||||
Sbjct: 559 aacgatgaattagtttattgacaaggaacaca 590


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 789
Length adjustment: 9
Effective length of query: 382
Effective length of database: 780
Effective search space:   297960
Effective search space used:   297960
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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