Query= MSMg01no379_c13.b1 MSMg01no379_c13.b1 CHROMAT_FILE:
MSMg01no379_c13.b1 PHD_FILE: MSMg01no379_c13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:51 2005
(630 letters)
>mm_chr10_112124906_112125933
Length = 1028
Score = 980 bits (507), Expect = 0.0
Identities = 620/697 (88%), Gaps = 69/697 (9%)
Strand = Plus / Minus
Query: 1 cataaatctatccagagcatgtaaatacacacacacacacacacacacacacacacacac 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 971 cataaatctatccagagcatgcaaatacacacacacacacacacacacacacacacacac 912
Query: 61 acaca------------------------------cacacactcacaca--catacacat 88
||||| |||||||||||||| || ||||||
Sbjct: 911 acacacacactcacacactcacacactcacacactcacacactcacacactcacacacat 852
Query: 89 acacacacacacatacacacactcacacacactctctcaca--------cacacacacac 140
||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 851 acacacacacacatacacacactcacacacactctctcacacacacactcacacacacac 792
Query: 141 t--cacacat----------------t----cacacacactctctctcacacccacacac 178
| ||||||| | |||||||||||||||||||||||||||||
Sbjct: 791 tcacacacatactcacacacacacactcacacacacacactctctctcacacccacacac 732
Query: 179 accatttttatcttaatcatgaagtatttattctcatattgcaaaagtataatttcatag 238
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 731 accatttttatcttaatcatgaagtatttattctcatattgcaaaaatataatttcatag 672
Query: 239 gtttgtagtttctttcctcaagttggatgtaagtcttcgtgacttaactagaaactctta 298
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 671 gtttgtagtttcattcctcaagttggatgtaagtcttcgtgacttaactagaaact-tta 613
Query: 299 agttaggtaagctgtaacaatctcttttggagtctctatatttttgactttttcatatgt 358
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 612 agttaggtaagctgtaacaatctcttttggagtctctatatttttgacttttccatatgt 553
Query: 359 ttacttagcttagaatcaggaatggtagtgcttgcaaattttggcaatgctctcctaccc 418
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 552 ttacttaacttagaatcaggaatggtagtgcttgc-aattttggcaatgctctcctaccc 494
Query: 419 tctttacaatcagatcctgtggaaaagattattagctcattgtacttaaagccttttatt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tctttacaatcagatcctgtggaaaagattattagctcattgtacttaaagccttttatt 434
Query: 479 acacatgccttcgcattcatataatgcactaaacacagggctataaatgaggctttataa 538
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 acacatgccttcacattcatataatgcactaaacacagggctataaatgaggctttataa 374
Query: 539 tattttct-ttttt----ttaatttatttttttttacttattcactttactttctactca 593
|||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tattttctgtttttaaatttattttatttttttttacttattcactttactttctactca 314
Query: 594 ctgccccctcccagacaccccctctcacaatccttcc 630
|||||||||||||||||||||||||||||||||||||
Sbjct: 313 ctgccccctcccagacaccccctctcacaatccttcc 277
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 184
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1028
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1018
Effective search space: 631160
Effective search space used: 631160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no379_c13.g1 MSMg01no379_c13.g1 CHROMAT_FILE:
MSMg01no379_c13.g1 PHD_FILE: MSMg01no379_c13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:51 2005
(540 letters)
>mm_chr10_112051981_112052920
Length = 940
Score = 1036 bits (536), Expect = 0.0
Identities = 539/540 (99%)
Strand = Plus / Plus
Query: 1 caaaagaacgtaggatgttaatctcaaaggttaaagaaaaatggttgacacatttcgttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaaagaacgtaggatgttaatctcaaaggttaaagaaaaatggttgacacatttcgttt 260
Query: 61 gcttagggtattttattaaaatgagccctccacctgggaattttccttctgtgatttgaa 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 gcttagggtattttattaaaatgagccctccacttgggaattttccttctgtgatttgaa 320
Query: 121 tgcatatgatgaatcttaatcacctggatgatagtactaagagacagggatcttagggag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcatatgatgaatcttaatcacctggatgatagtactaagagacagggatcttagggag 380
Query: 181 gcatggagaggggggagatctctcaacagaggattaatgacttcagaacacctttggaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcatggagaggggggagatctctcaacagaggattaatgacttcagaacacctttggaaa 440
Query: 241 gaggagcttgcctagctttctttgtgccctgtgaagaagaataagagtgagggagagaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaggagcttgcctagctttctttgtgccctgtgaagaagaataagagtgagggagagaca 500
Query: 301 ccatctatgatgcttgcagtacacttcatcagtagtaccatgagaaaccagtgtctacag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccatctatgatgcttgcagtacacttcatcagtagtaccatgagaaaccagtgtctacag 560
Query: 361 ccatctttaacatcatgataaagggtaccataaacacagagtggaaataagacagcctct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccatctttaacatcatgataaagggtaccataaacacagagtggaaataagacagcctct 620
Query: 421 ttgacagtggtgctgagaaaaactagagtaatgaaccaagaccactatttctcacatgca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgacagtggtgctgagaaaaactagagtaatgaaccaagaccactatttctcacatgca 680
Query: 481 caaatatcaactcaaagtgggtcaatggtcttaaaccacacctttcaaatgaagtacagt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caaatatcaactcaaagtgggtcaatggtcttaaaccacacctttcaaatgaagtacagt 740
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space: 492900
Effective search space used: 492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
