Query= MSMg01no379_j13.b1 MSMg01no379_j13.b1 CHROMAT_FILE:
MSMg01no379_j13.b1 PHD_FILE: MSMg01no379_j13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:24 2005
(555 letters)
>mm_chr10_43330164_43331118
Length = 955
Score = 955 bits (494), Expect = 0.0
Identities = 537/558 (96%), Gaps = 15/558 (2%)
Strand = Plus / Plus
Query: 6 ggaattctctctg-ttctccttatcatttaaaatgtatttcccattattgttagaaaaat 64
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattctctctgatt-tccttatcatttaaaatgtatttcccattattgttagaaaaat 263
Query: 65 ttt-aagtcatatcttttaatttcttgattaatataaactcatatttaaaagttattaat 123
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttttaagtcatatcttttaatttcttgattaatataaactcatatttaaaagttattaat 323
Query: 124 atatgtgcaggcatggtatatgtggggatatgctcagaggacatctctgtggagtcagtt 183
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atatgtgcaggcatgatgtatgtggggatatgctcagaggacatctctgtggagtcagtt 383
Query: 184 ctcacgctccacttttatgtaggtgttggagattgaactcaggtagccagggttttgagg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctcacgctccacttttatgtaggtgttggagattgaactcaggtagccagggttttgagg 443
Query: 244 caagcacctctacctactgagccaaattgccatttttt------atgaacgacttttcaa 297
|||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 444 caagcacctctacctactgagccaaattgcca------gcccaaatgaacgacttttcaa 497
Query: 298 tataacaactaaatttaaaatttctacgcaaatgtttgtttttaacttcctcttttttaa 357
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 498 tataacaactaaatttaaaatttctatgcaaatgtttgtttttaacttcctcttttttaa 557
Query: 358 ggtattggttatttattggagataatgtttaaaatatttatgctaatgttcaaaaaattt 417
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ggtattggttatttatcggagataatgtttaaaatatttatgctaatgttcaaaaaattt 617
Query: 418 cctgttccctacactgtgtttctccacaatgttttattcatgtctttattgctctgtctt 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 cctgttccctacactgtgtttctccacaatgttttattcatgtctttattgctctgtctt 677
Query: 478 ctttttaaaataacattatttcttatgcatggtggtttgcctgcttgtgggtctgtggat 537
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 678 ctttttaaaataacattatttcttatgcatggtggcttgactgcttgtgggtctgtggat 737
Query: 538 cacatgtgtgcctggtat 555
||||||||||||||||||
Sbjct: 738 cacatgtgtgcctggtat 755
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space: 515025
Effective search space used: 515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no379_j13.g1 MSMg01no379_j13.g1 CHROMAT_FILE:
MSMg01no379_j13.g1 PHD_FILE: MSMg01no379_j13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:24 2005
(542 letters)
>mm_chr10_43495614_43496555
Length = 942
Score = 1040 bits (538), Expect = 0.0
Identities = 541/542 (99%)
Strand = Plus / Minus
Query: 1 tcctgtgcacttccatataattctcattttcccctaaggctttctagtgaacctcaataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 tcctgtgcacttccatataattctcattttcccctaaggctttctagtgaacctcaataa 683
Query: 61 atttttattgaacaaatcattattttagggtctatccacaaaaactcacatacttttccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 atttttattgaacaaatcattattttagggtctatccacaaaaactcacatacttttccc 623
Query: 121 ataggacagatgtaaaccatctgagctgtgcgctgtccactggctattggccatttggtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ataggacagatgtaaaccatctgagctgtgcgctgtccactggctattggccatttggtc 563
Query: 181 tttagaatgaagaaagaaacaaagagttctgacaggagcaattctgagctcttggagttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tttagaatgaagaaagaaacaaagagttctgacaggagcaattctgagctcttggagttt 503
Query: 241 aaggacaggtaattctgaggatcctgagggaagacttggaggcatcaaagcatgatatta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aaggacaggtaattctgaggatcctgagggaagacttggaggcatcaaagcatgatatta 443
Query: 301 tctcctttgcaattttgtcagacactccaaaacactagtgagcaggataaagtataaaga 360
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 442 tctcctttgcaattttgtcagacactccaaaacactggtgagcaggataaagtataaaga 383
Query: 361 agtggattaatcttcttcatatcaattagaattgatctgaacagggactggtcaattctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 agtggattaatcttcttcatatcaattagaattgatctgaacagggactggtcaattctc 323
Query: 421 atgaaagcccatttggctgatcccatgtccatgtgaccacctgcaaaggtgcctggcccg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 atgaaagcccatttggctgatcccatgtccatgtgaccacctgcaaaggtgcctggcccg 263
Query: 481 gtttgttccactccttttagcctttccagggaaaggactgagagtagaaaagagccagag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gtttgttccactccttttagcctttccagggaaaggactgagagtagaaaagagccagag 203
Query: 541 cc 542
||
Sbjct: 202 cc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space: 495824
Effective search space used: 495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
