Query= MSMg01no379_l21.b1 MSMg01no379_l21.b1 CHROMAT_FILE:
MSMg01no379_l21.b1 PHD_FILE: MSMg01no379_l21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:35 2005
(421 letters)
>mm_chr10_9474284_9475103
Length = 820
Score = 795 bits (411), Expect = 0.0
Identities = 417/419 (99%), Gaps = 1/419 (0%)
Strand = Plus / Minus
Query: 3 cggaattctcatgcttgtctctagatttctgcctcttagtgtgatacaaaactggcccac 62
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cggaattctcatgcttgtttctagatttctgcctcttagtgtgatacaaaactggcccac 561
Query: 63 atgggggcagtcatgtcttggacaagaagtccttacagtaatttccaagttagaaaggct 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atgggggcagtcatgtcttggacaagaagtccttacagtaatttccaagttagaaaggct 501
Query: 123 ttcatgatatattcttttttatctgaaaacttatacaacacatcattttatactatcgct 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttcatgatatattcttttttatctgaaaacttatacaacacatcattttatactatcgct 441
Query: 183 cagtaatgtagatcatttcatattggcctgactgattatcaaaagttttagtactttcat 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cagtaatgtagatcatttcatattggcctgactgattatcaaaagttttagtactttcat 381
Query: 243 acttaagtacaaatttgaaaaaaaaaaagattttcttctgtctcgggccatgctttctat 302
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 acttaagtacaaatttg-aaaaaaaaaagattttcttctgtctcgggccatgctttctat 322
Query: 303 ttgagtgtcctgtgttaagtggcactgtgtcattcgatgctttggggtaaaagagcctcc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgagtgtcctgtgttaagtggcactgtgtcattcgatgctttggggtaaaagagcctcc 262
Query: 363 ttggtctcaccgttcctaggactctgtgggaagattctaacattcttccattaacttaa 421
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttggtctcaccgttcctaggactctgtgggaagattctaacattcttccattaacttaa 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 820
Length adjustment: 9
Effective length of query: 412
Effective length of database: 811
Effective search space: 334132
Effective search space used: 334132
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no379_l21.g1 MSMg01no379_l21.g1 CHROMAT_FILE:
MSMg01no379_l21.g1 PHD_FILE: MSMg01no379_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:35 2005
(493 letters)
>mm_chr10_9345278_9346168
Length = 891
Score = 874 bits (452), Expect = 0.0
Identities = 483/494 (97%), Gaps = 4/494 (0%)
Strand = Plus / Plus
Query: 1 tctagttagtcttaaggtaatctcttccacataagaggaaatgaataaaataactgaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctagttagtcttaaggtaatctcttccacataagaggaaatgaataaaataactgaaat 260
Query: 61 tcaggaagggagtgggggagagacagtgagtgcctgctaatgccgtgcctaagccaaaga 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 tcaggaagggagtgggggagagacagtgagtgcctgctaatgccgtgtctaagccaaaga 320
Query: 121 ctgaggatagatatgagctggagacagcttaagcctcttaagaga-tgcttaggagatgc 179
||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||
Sbjct: 321 ctgaggatagatatgagctggagacagcttaagcctcttaaga-agtgc--aggagatgc 377
Query: 180 ttgttgctgccagttatggaagagagaagagaagctttaagtttcagaattacttgccat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ttgttgctgccagttatggaagagagaagagaagctttaagtttcagaattacttgccat 437
Query: 240 gattcctcaagctataccacagcttaggaacctagcagcgccaccccaggaaaactcctg 299
||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 438 gattcctcaagctatactacagcttaggaacctagcagcaccacgccaggaaaactcctg 497
Query: 300 cggtagttctagaatttcaactacaatctgtgcaatctcaaaggaaaattttaatgctca 359
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 498 cggtagttctagaatttcaactacaatctgtgcaatctcaaagaaaaattttaatgctca 557
Query: 360 ctctcatcctctagttcaagttattaaccacgttgcaaacttttctcttctaagaaactg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ctctcatcctctagttcaagttattaaccacgttgcaaacttttctcttctaagaaactg 617
Query: 420 attgatctgaactgagaaactatatcgtggccaaaggttcagggtttctttttcctgaga 479
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 618 attgatctgaactgagaaactatattgtggccaaaagttcagggtttctttttcctgaga 677
Query: 480 tttctgacttagtt 493
||||||||||||||
Sbjct: 678 tttctgacttagtt 691
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 891
Length adjustment: 10
Effective length of query: 483
Effective length of database: 881
Effective search space: 425523
Effective search space used: 425523
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
