BAC Information

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BAC

Clone NameMSMg01-380B03
Chromosome10 (Build37)
Map Location 28,165,950 - 28,166,370
singlet/doubletsinglet
Overlap genePtprk
Upstream geneLama2, LOC100040385, LOC100040961, LOC100040401
Downstream geneE430004N04Rik, 4930519F09Rik, 2310057J18Rik, LOC432447, 6330407J23Rik, Echdc1, Rnf146
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380B03.T7 (MSMg01no380_b03.b1)MSMg01-380B03.TJ (MSMg01no380_b03.g1)
ACCAG484533AG484534
length753756
length of high quality
(start - end)
486 (60 - 545)427 (67 - 493)
definitionCHROMAT_FILE: MSMg01no380_b03.b1 PHD_FILE: MSMg01no380_b03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:01 2005CHROMAT_FILE: MSMg01no380_b03.g1 PHD_FILE: MSMg01no380_b03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGCGGAATTCCAAC
AGATTTCCCTCGAGTGGCTGAGAAGTACTTAAAGAAATGTTCAAAGTGTT
TAGTCATCAGAGAAATGAAAATCAGTATTAAGAGTCACCTCACTTCAATC
AGAATTGCTACCATCAAAAACTCAAGTGACAGCAGATGCTGGCAAGGGTG
TGGAGAAAGAGGATCACTCCTCCATTGCTGGTGGGATTGCAAGTTGTTAC
AAACACTCTAGAAATCAATCTGGTGGTTCCTCAGAAAATTGGAAATTGTG
TTAGTGTTACCTGAATATTTAGCTATACGACTCTGGGCATATACCCAGAA
GATGCTCCAACATGTAATAAGGACACATGTTCCATCATGTTCATAGCAGC
TTTATTTGTAATAGCCAGAAGCTGGAAACAACCTAGATGTCCCTCAACCA
AAGAATGGATACAGAAAATGGGGTTCATTTACACACTACGATACTATTCA
GCTACTATAAAGGAGGACACCATGAATTTTGCAGGCAAATGAATGGAACT
AGAATATATCCTGAGTGAGGTAACCCAGACTCTNAATGATATCACTGATG
AGTGGATATTAGTCAAAAAGTACAGAATACCTAGGACACAATTTATAGAT
CATAACAAGCGTAACAAGTAAAAAGGCCCTAGTGAGGATGTTTCAATTCC
CCTTAAAAAAGGCAAAGTATATATCCCTGGAAGCTTAAGGTCGTCAGTCC
TTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAATGCCAGGCAAGACTTGAATTGACTTCAAGAAA
TCAAGCTACATTCAAGGAATTAATCTGTTCAGTTTCACTGAGGAAGAGAA
AGAAGAAGAGCGTGGCCTCTGAACTCTATGTGCTAAACTATATTTAGTCC
CTATGTTAGTAAAGGCTTAGTAAATTATTCAGGAAGATTATGGCTCCTCT
TCCCCTGGAGATACTATGTAAGTACACCGAAGCTCTTATCTGCTCTGTTT
TGACAATGATCTTGCCCTGGCAGAGCAATTGCCATTTTAAATAACCCGTC
AAGAACTCTTCCACTTAACTGATGCTGTACCATACATGCTTGTGCTGTTA
CTACTGTTGATGCTGCTGCTGCTGCTGTTGTTGTTGTTGATACTATCATG
TGCTTCTGGTGTGCTACAGGTTTTATAAGTTATATTTTTCCTTGCAAAGA
CTAGAGAAATTATTGTGATTTGTTGTGCGACTCACTCTATAAGATAAAAT
TAAGTACTGAGAACTCACTTTAACTGACTCAGTACTAGTTTTTTAATCTC
TTAATACTTTTCAATGCGCGTTCTGCCAAAAAAGCAATATACCATTTTTT
ATTAAAAACACCCCCCATACTATTGGCACGCATTTATTTTTGCATGCTCC
CTTTATTTTCTTTTAACACCACTCCTCTGTTTTTCATCCCTATGTCCCTA
CTATCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_b03.g1 MSMg01no380_b03.g1 CHROMAT_FILE:
MSMg01no380_b03.g1 PHD_FILE: MSMg01no380_b03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:01 2005
         (427 letters)



>mm_chr10_28165750_28166576
          Length = 827

 Score =  791 bits (409), Expect = 0.0
 Identities = 420/427 (98%), Gaps = 6/427 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgccaggcaagacttgaattgacttcaagaaatcaagctacattcaaggaattaatct 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 aatgccaggcaagacttgaattgacttcaagaaatcaagctacattcagggaattaatct 260

                                                                       
Query: 61  gttcagtttcactgaggaagagaaagaagaagagcgtggcctctgaactctatgtgctaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttcagtttcactgaggaagagaaagaagaagagcgtggcctctgaactctatgtgctaa 320

                                                                       
Query: 121 actatatttagtccctatgttagtaaaggcttagtaaattattcaggaagattatggctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actatatttagtccctatgttagtaaaggcttagtaaattattcaggaagattatggctc 380

                                                                       
Query: 181 ctcttcccctggagatactatgtaagtacaccgaagctcttatctgctctgttttgacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcttcccctggagatactatgtaagtacaccgaagctcttatctgctctgttttgacaa 440

                                                                       
Query: 241 tgatcttgccctggcagagcaattgccattttaaataacccgtcaagaactcttccactt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgatcttgccctggcagagcaattgccattttaaataacccgtcaagaactcttccactt 500

                                                                       
Query: 301 aactgatgctgtaccatacatgcttgtgctgttactactgttgatgctgctgctgctgct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aactgatgctgtaccatacatgcttgtgctgttactactgttgatgctgctgctgctgct 560

                                                                       
Query: 361 gttgttgttgttgatactatcatgtgcttctggtgtgctacaggttttataagttatatt 420
           |||||||      |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttgttg------atactatcatgtgcttctggtgtgctacaggttttataagttatatt 614

                  
Query: 421 tttcctt 427
           |||||||
Sbjct: 615 tttcctt 621


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 827
Length adjustment: 9
Effective length of query: 418
Effective length of database: 818
Effective search space:   341924
Effective search space used:   341924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)