BAC Information

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BAC

Clone NameMSMg01-380B21
Chromosome10 (Build37)
Map Location 110,607,540 - 110,608,044
singlet/doubletsinglet
Overlap geneOsbpl8
Upstream geneLOC100042506, LOC100042510, LOC667855, 9230102K24Rik, LOC100042518, E2f7, Csrp2, Zdhhc17, EG432502, LOC667904
Downstream geneBbs10, Nap1l1, EG382421, Phlda1, Krr1, Glipr1, EG639527, Glipr1l1, Glipr1l2, LOC627895, Glipr1l3, Caps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380B21.T7 (MSMg01no380_b21.b1)MSMg01-380B21.TJ (MSMg01no380_b21.g1)
ACCAG484569AG484570
length736745
length of high quality
(start - end)
576 (40 - 615)512 (72 - 583)
definitionCHROMAT_FILE: MSMg01no380_b21.b1 PHD_FILE: MSMg01no380_b21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:05 2005CHROMAT_FILE: MSMg01no380_b21.g1 PHD_FILE: MSMg01no380_b21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
CTGACTTGCCTAGAAAGGCCAGCTGGGATGCCCCCAAAGTTTGGGGACTA
AGACTCTATCGATCCACAGGGGCCGACCCGGTGACCCGGTTCTCTTTGAC
CCGCCAGGTCCTCAATGTAGGACCCCGCGTCCCCATTGGGCCTAATCCCG
TGATCACTGACCAACTACCCCCATCCCAACCCGTGCAGATCATGCTCCCC
AGGCCTCCTCATCCTCCTCCTTCAGGCACGGTCTCTATGGTACCTGGGGC
TCCCCCGCCTTCTCAACATCCTGGGACGGGAGACAGGCTGCTAAATCTGG
TAGAAGGAGCCTACCAAGCACTCAACCTCACCAGTCCTGACAAAACCCAA
GAGTGCTGGTTGTGTCTGGTATCGGGACCCCCCTACTACGAAGGGGTTGC
CGTCCTAGGTACCTACTCCAACCATACCTCTGCCCCAGCTAACTGCTCCG
TGGCCTCCCAACACAAGCTGACCCTGTCCGAAGTAACCGGACAGGGACTC
TGCGTAGGAGCAGTTCCCAAAACCCATCAGGCCCTGTGTAATACCACCCA
TAAGACGAGCGACGGGTCCTACTATCTGGTTGCTCCCGCCGGGACCATCT
GGGCTTGCAACACCGGGATCACTCCCTGTCTATCTACTACTGTATTCCAC
CTCACCCCCTATTACTGTGTTCTGCTTGATCTCTGT
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGAAGTTTTGGAGTTGACTGATAGGCCTCT
CCAACATTTCTCTCCACATGTGCTTGTGTGTACAGGCGTATTTGTATGTA
CTTGTGTGTACATGCCAGTGTTGTGCTTGCTGAGTAGGCTAAACTGGCTA
GCTGGCCAGTGAGCTTTAGGTATGACCGTAATTCTCCTTTCCCAGCCCTG
GGATTGTACATGTAGGCCTCTGTCTGGTTTTTACACATGGCCAGGAGAGT
GAACTCATGTACCAAATGTATGCACATGAGCACTAGTTATGAGATGTCAC
AGTTTCTTGCAAAGAATCCAAAGCCTTTATAAATTACGGAATGTCTAGTG
GGAATGCTACCCCTCTGGGAGAGAGGAGCTGATGTAAGCGGTATTTTGAA
TGAGGTTGGAAGCTGGTGCCAAGAGGGCACGGATACATTGTTCAAGTGAG
AAGGTGGGGACTGGAAGAAACCAGGTGTGCTAAGTGTATACTTTTGTGTC
TTGTGGCTATTCTATTATTGAAGATGAGCAGTTCAGAAGCTAAGAAAAAC
AGCACTGTGCATTGTAGTGTGGCTTTTGTAATAATACTGTGTGTATACAA
ATATTGGCAGCAATGGATTCTCTTATCACCCTCTTTTTAAACCTGTTAAG
AAACAGAGTAACTTTGACTTGTTTGCCCGACTGTAAGTTTCAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_b21.g1 MSMg01no380_b21.g1 CHROMAT_FILE:
MSMg01no380_b21.g1 PHD_FILE: MSMg01no380_b21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:05 2005
         (512 letters)



>mm_chr10_110607340_110608251
          Length = 912

 Score =  905 bits (468), Expect = 0.0
 Identities = 498/512 (97%), Gaps = 7/512 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaagttttggagttgactgataggcctctccaacatttctctccacatgtgcttgtgtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaagttttggagttgactgataggcctctccaacatttctctccacatgtgcttgtgtgt 260

                                                                       
Query: 61  acaggcgtatttgtatgtacttgtgtgtacatgccagtgttgtgcttgctgagtaggcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaggcgtatttgtatgtacttgtgtgtacatgccagtgttgtgcttgctgagtaggcta 320

                                                                       
Query: 121 aactggctagctggccagtgagctttaggtatgaccgtaattctcctttcccagccctgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aactggctagctggccagtgagctttaggtatgaccgtaattctcctttcccagccctgg 380

                                                                       
Query: 181 gattgtacatgtaggcctctgtctggtttttacacatggccaggagagtgaactcatgta 240
           || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 gactgtacatgtaggcctctgtctggtttttacacatggccaggagagtaaactcatgta 440

                                                                       
Query: 241 ccaaatgtatgcacatgagcactagttatgagatgtcacagtttcttgcaaagaatccaa 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccaaatgcatgcacatgagcactagttatgagatgtcacagtttcttgcaaagaatccaa 500

                                                                       
Query: 301 agcctttataaattacggaatgtctagtgggaatgctacccctctgggagagaggagctg 360
           |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 agcctttataaattactgaatgtctagtgggaatgctacccctctggaagagaggagctg 560

                                                                       
Query: 361 atgtaagcggtattttgaatgaggttggaagctggtgccaagagggcacggatacattgt 420
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 561 atgtaagcggtattttgaatgaggttggaagctggtgccaagagggcatggatacattgt 620

                                                                       
Query: 421 tcaagtgagaaggtggggactggaagaaaccaggtgtgctaagtgtatacttttgtgtct 480
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcaagtgagaaggtgggaactggaagaaaccaggtgtgctaagtgtatacttttgtgtct 680

                                           
Query: 481 tgtggctattctattattgaagatgagcagtt 512
           |||       ||||||||||||||||||||||
Sbjct: 681 tgt-------ctattattgaagatgagcagtt 705


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)