BAC Information

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BAC

Clone NameMSMg01-380I02
Chromosome10 (Build37)
Map Location 104,935,694 - 104,935,892
singlet/doubletsinglet
Overlap geneTmtc2
Upstream geneLOC100042383
Downstream geneEG627573, BC067068, Ccdc59, EG667758, EG639162, Ppfia2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380I02.T7 (MSMg01no380_i02.b1)MSMg01-380I02.TJ (MSMg01no380_i02.g1)
ACCAG484865AG484866
length673787
length of high quality
(start - end)
56 (197 - 252)199 (74 - 272)
definitionCHROMAT_FILE: MSMg01no380_i02.b1 PHD_FILE: MSMg01no380_i02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:36 2005CHROMAT_FILE: MSMg01no380_i02.g1 PHD_FILE: MSMg01no380_i02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCGCTAACACCACATAATCGGATGGCGGAATCCATTCNATTCAACAGGA
AGAGTTTATCTCACTTTGATCCTCAGAACGCTGTGCATATTTTGGAGATC
CCATTTGGGTTTCTTCTTGGAACCATTCATTTATCAAGAGTTGAGCCGAT
CATATCTTAAAGGGATTCCAGAAACTCTTACTGCTTTGGTCTAGAATTGC
ATCTGTATGTATTTTTTCTGAAAGTCTATCTTTCCTTTGAAGGTTATTCC
AGGAACTTCATTCTCTTTGTATTTAAAGTTGATTCTGACAGTAAAATTCG
ACCAATTTCCAGAGCATTGGCACGGAATCTTTCTCCATGTCATCCTTGAA
AAGTTCATCTTCCTTCCTCAAGCCTTCATGAGTCATCTTTCCATTTGTCT
TTCCAGCTGCTCAGCTGAATTTCTTTTCTATTCTTCCCTGACTTTCTGAT
CGCGACGAGAGGTGTCTCACACAGTCTGTTTTTTCTTGCTTTACTGACAT
TAGCCATCCCAAATCCGAATACCCCTGACCGATTTGTATTTACCCCTCTC
ATGTACCGTTTTTTTTTTACCTGATATCATATATGGCTCAGATTATTCTC
CGCTCCTGTTCTCTTTTCCTTTAACTAATTTCCCCTCCTCTTTTTTTATT
TTTTCACCTTCGGCACACCCCCT
TGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTGCGCAATTCAGTTACAGAAGCCCCCATATCTCACAAAAGG
ATTCCACAAGGTATTAATACATCATGCTGTATTCATGTTAGTTCTATTTT
CTCGTGTAAAATTCATTTAGGGAACAGGAAAATTATTATCATAATTCTTT
GCATCACTGTGAGGACACAGGCAGCCAGACAGCTCTTCATATATTTCTTT
TAAGTGGAAGTTGTCTTTCTGAAGGCAGGAGAGGGATCACAACAACTCAT
CTCTGCTCTCTCATGATTTTTTTTAGAACTATTATCACGGGCTGTTCTGT
TCCTATGATTGTTTGCTCCCTTCCTTTCTTTCTTGCTTGCCTCGCCTTAC
TTCCGTCTTGCTTACCTCTCTATTTAATGTTTTATATCTAGTCCAGGCTA
ACCTGATTTCACCCACGTCGTATTTGTCCTCCCGTTTTTTCTTGTCCCTG
TTTTCCCTTTGATATTTATATTTTTTTGTTCTCCTTTATTCTAATATTTT
TTTTTTTTTTTCCTAATGTTTCCTTTTTTCACCCTTTTTATTCCCATTAC
ACCCTTTCTTTGTTGTCAACATTCGTATCCTACATGTTTTATTCTTTTAT
ATTTTTACTATCCTTCCCTACTTTTATTTATTTTTATTTATTTTTTCTTT
TTTCTTCCTCTTAGTATTTTTATCTCTATTTCTTTTCTCTCAACAATCTT
TTTGTTTATCTCCTACCACTCTTTTCTCTCCCATTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_i02.g1 MSMg01no380_i02.g1 CHROMAT_FILE:
MSMg01no380_i02.g1 PHD_FILE: MSMg01no380_i02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:36 2005
         (199 letters)



>mm_chr10_104935494_104936092
          Length = 599

 Score =  362 bits (187), Expect = e-104
 Identities = 196/199 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagaagcccccatatctcacaaaaggattccacaaggtattaatacatcatgctgtatt 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagaagcccccaaatctcacaaaaggattccacaaggtattaatacatcatgctgtatt 260

                                                                       
Query: 61  catgttagttctattttctcgtgtaaaattcatttagggaacaggaaaattattatcata 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 261 catgttagttctattttctcgtgtaaaattcatttagggaacaggaaaatcattagcata 320

                                                                       
Query: 121 attctttgcatcactgtgaggacacaggcagccagacagctcttcatatatttcttttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attctttgcatcactgtgaggacacaggcagccagacagctcttcatatatttcttttaa 380

                              
Query: 181 gtggaagttgtctttctga 199
           |||||||||||||||||||
Sbjct: 381 gtggaagttgtctttctga 399


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 199
Length of database: 599
Length adjustment: 8
Effective length of query: 191
Effective length of database: 591
Effective search space:   112881
Effective search space used:   112881
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)